Deinococcus taeanensis: LAJ19_11485
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Entry
LAJ19_11485 CDS
T09106
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dtae
Deinococcus taeanensis
Brite
KEGG Orthology (KO) [BR:
dtae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dtae03016
]
LAJ19_11485
Enzymes [BR:
dtae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LAJ19_11485
Transfer RNA biogenesis [BR:
dtae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LAJ19_11485
Prokaryotic type
tRNA splicing ligases
LAJ19_11485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UBV42239
LinkDB
All DBs
Position
2387610..2389013
Genome browser
AA seq
467 aa
AA seq
DB search
MNGKHLTKLGFEKRAIALAQTAATARERAGLERDDILSELRGVQRNPHAYLGGGVYAELA
EELTNQETAREALRGAELRATPLPYPVWGEDLIDQAARTQMDVAMRLPISRAGALMPDAH
VGYGLPIGGVLATENAVIPYGVGVDIGCSMMLSVFPLPARDLPTEEARSLLMKHTRFGAG
VAFDKRDRQDHDVLHERTWTDQALLRRLFDKAATQIGTSGSGNHFVEFGALSLPHADLGL
DAGEYLAVLSHSGSRGFGAQVAGHYTQLAERHHPNLSPEAKKLAWLPLDHEDGQAYWQAM
NLAGRYALANHDLIHARLARALNVKPLAQVSNSHNLAWKQQHEGQELIVHRKGATPAEPG
RLGLIPGSMADPGYVVRGRGHAGALHSASHGAGRQLGRKAAERTLAKKDVQAYLRDHNIT
LIGGGIDEAPQAYKRIQDVIARQNDLVEIVASFQPRVVRMDTGHEDV
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcaaacacctcacgaaactcggctttgagaaacgagccatcgccctcgcccag
acggccgccactgcccgcgaacgcgccggtctggaacgtgacgacatcctcagcgaactg
cgcggcgtgcagcgcaatccccacgcgtacctgggcggcggcgtgtacgccgaactcgcc
gaggagctcaccaaccaggaaaccgcccgcgaggccctgcgcggcgccgaactgcgcgcc
acgcccctcccctaccccgtctggggtgaggacctgattgatcaggccgcccgcacccag
atggacgtcgccatgcggctgcccatcagccgcgccggcgccctgatgcccgacgcccac
gtcgggtacggcctgcccatcggcggcgtgctcgccaccgaaaacgccgtgattccctac
ggcgttggcgtggacatcggctgctccatgatgctcagcgtcttccccctcccggcccgc
gaccttcccaccgaggaggccagaagcctgctgatgaaacacacccgcttcggcgctggc
gtcgccttcgacaaacgcgaccggcaggaccacgacgttctgcatgaacgcacctggacg
gaccaggctctcctgcgccgcctgttcgacaaggccgccacacagatcggcaccagtggc
agcggcaaccacttcgtggagttcggcgccctcagccttccccacgctgaccttggcctg
gacgccggcgagtacctcgcggtcctgtctcacagcggcagccgcggttttggcgcgcag
gtggccgggcactacacccagctggccgaacggcaccacccgaacctcagccccgaagcg
aagaaactggcgtggctgccccttgaccatgaggacggccaggcgtactggcaggccatg
aacctcgccggccggtacgcgctggccaaccacgacctcatccacgcccgcctcgcccgg
gccctgaacgtcaaacccctcgcgcaggtgagcaacagccacaacctcgcctggaagcaa
cagcacgaggggcaggaactcatcgtgcaccgcaaaggcgccacgcccgccgaacctggc
cgcctcggcctcattcccggcagcatggcagacccggggtacgtcgtccgcggccgtggc
cacgccggcgccctgcacagcgccagtcacggcgccggacgccagcttggccgcaaggcc
gcggaacgcaccctcgccaagaaagacgttcaggcgtacctccgcgaccacaacatcacc
cttatcggcggcgggattgacgaggcgccccaggcgtacaaacgcattcaggacgtcatt
gcccgccagaacgatctcgtggagatcgtcgccagcttccagccccgcgttgtgcgcatg
gacaccgggcacgaggacgtgtaa
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