Deinococcus taeanensis: LAJ19_12510
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Entry
LAJ19_12510 CDS
T09106
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dtae
Deinococcus taeanensis
Pathway
dtae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAJ19_12510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtae03019
]
LAJ19_12510
Messenger RNA biogenesis [BR:
dtae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAJ19_12510
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UBV42434
LinkDB
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Position
2603344..2605017
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AA seq
557 aa
AA seq
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MTNPSKAPRPEGAAPHLEVIPLGGMGEIGKNITAYRYGDEIMVVDAGLAFPESHQMGIDL
IIPRIDYLQQHAGLIKGWILTHGHEDHIGGLPYILPRLPRVPVYGAGLTLGLVREKLAEF
GIKDGEVDLREVGLTDKVRIGTHFQVEFIRMTHSIPDNAGYILTTPAGVVLHTGDFKLDE
EPSDGKVSDLARIEQAGREGVLLLLSDSTNAERPGRTVSEAEVARNLETLIAGLKGRVFM
TTFASNVHRIQNVINIAHRQRRRVVMEGRSMLKYAQVAQTLGYMELPEPFLTNDEVGGLQ
DQQVLYVCTGSQGQPMSVLSRLAFGNHAKIALRRGDSVILSSNPIPGNEEAVNLVINRLY
EIGVDVYYPPAYRVHASGHGSQEELATVLNLARPKYFLPWHGEPRHQINHARLAQTLPRP
PKRTLIAKNGDVIRLSQDDFKVTGTVPAGAVYVDGLGVGDIGDDVLLDRVNMSQEGILIM
TAVLHPTPHVEIVSRGFVRANRELDNQIRKVALEAVDQGMREKKRLEDVRDDMYGAVRRF
VRKVTGRNPVLIPLIVD
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaccccagcaaggccccccgccccgagggcgcggccccacaccttgaagtcatc
ccgctcggcgggatgggcgagataggcaagaacatcaccgcttaccgctacggcgacgag
atcatggtcgtcgacgcgggcctcgccttccctgaaagccaccagatgggcatcgacctg
atcattccgcgaattgactacctgcagcagcacgccggcctgatcaagggctggattctc
acgcacgggcacgaggaccacatcggcggcctgccgtacatcctcccgcgcctgccccgc
gtacccgtctacggcgccgggctgacccttggccttgtgcgcgagaagctcgccgagttc
ggcatcaaggacggcgaggtggacctgcgcgaggtgggtctgaccgacaaggtccggatc
ggcacgcactttcaggtggagttcatccgcatgacgcactccattccggacaacgccgga
tacattctcaccacgccggcgggcgtggtgctgcacaccggggacttcaaacttgacgag
gaacccagcgacggcaaggtcagcgatctcgcccgcatcgagcaggccggccgtgagggt
gtactgctgctcctgagtgactccacgaacgccgaacgccccgggcgcacggtcagtgag
gcggaagtggcccgcaaccttgagaccctgattgccggcctgaagggccgcgtgttcatg
acgaccttcgcgtcgaacgtgcaccgcattcagaacgtgatcaacatcgcgcaccgtcag
cgccggcgcgtggtcatggaagggcgcagcatgctcaagtacgcccaggtggcccagacg
ctggggtacatggagctgcctgagccgttcctgaccaacgatgaggtgggcggcctgcag
gaccagcaggtgctgtacgtgtgcaccggcagccagggccagcccatgagcgttctgtcg
cgcctggccttcgggaatcacgcgaagatcgcgctgcgccgcggcgacagcgtcatcctg
tccagcaaccccattcccgggaatgaggaagccgtgaaccttgtcatcaaccgcctgtac
gagatcggtgtggacgtgtactacccgcccgcgtaccgcgtgcacgcgtccgggcacggc
agccaggaggaactcgccacggtcctgaatctcgcgcggcccaagtacttcctgccgtgg
cacggcgaaccccgccaccagatcaatcacgcccgcctcgcccagacgctgccgcggccg
cccaaacgcaccctgatcgccaagaacggtgacgtgatccgcctcagtcaggatgacttc
aaggtgaccgggaccgtcccggccggcgccgtgtacgtcgatggcctgggcgtcggcgac
atcggcgacgatgtgctgctcgaccgcgtgaacatgagccaggaaggcatcctgatcatg
acggccgtgctgcaccccaccccgcatgtggagatcgtgtcgcgcggattcgtgcgggcc
aaccgggagcttgacaaccagatccgcaaggtcgcgctggaggccgtggatcagggcatg
cgcgagaagaaacgtctggaagacgttcgtgacgacatgtatggcgcggtgcgccgcttc
gtgcgcaaggtcacgggacgcaaccccgtcctgattcccctgatcgtcgactga
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