Deinococcus taeanensis: LAJ19_16240
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Entry
LAJ19_16240 CDS
T09106
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
dtae
Deinococcus taeanensis
Pathway
dtae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dtae00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LAJ19_16240
09124 Replication and repair
03420 Nucleotide excision repair
LAJ19_16240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtae03021
]
LAJ19_16240
03400 DNA repair and recombination proteins [BR:
dtae03400
]
LAJ19_16240
Enzymes [BR:
dtae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAJ19_16240
Transcription machinery [BR:
dtae03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LAJ19_16240
DNA repair and recombination proteins [BR:
dtae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LAJ19_16240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UBV44709
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All DBs
Position
p_TS293_3:115875..117551
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AA seq
558 aa
AA seq
DB search
MSFDPLNPLIVQADRSVFLEAFNPRAEAARTDIAPFAELISSPEHLHTYRVTPLSLWNAA
SAGLTANGIMEALARHAKFPLPDNVATDVRELVGRWGRLKLERYDSALLLIVAAGDEALL
TELGRHKEIRPLLGEVMSSTVVTVPAAHRGVLKQQLIEVGWPVDDQAGYTDGAAFAVRLS
SSLQVRDYQREAAEAFYRAGSEQGGSGVVVLAPGAGKTVVGMAAMSLVGQRTLVLTTNRT
SVNQWHRELLNKTDLSPEDVSEYAAGKALTPVTLCTYQMLTHRKRSSLSGEDGAYPHLAL
IGASEWGLIIYDEVHLLPAPVFRLTAEVQARRRLGLTATLIREDGREGDVFALIGPKRYD
QPWKTLEAQGWIAQAHCLEVRLRLPPEERVQYAVAPDQDKHRIAAENPVKRTVLRQVMAR
HSGLPTLIIGQFLDQLELIGADLEVPVITGKTPQRTRETLFQAFREGHLKTLVLSRVGNF
ALDLPDAELLIQVSGAFGSRQEEAQRLGRLLRPKADGRAAYFYSLVTRETSEEDFAHHRQ
LFLAAQGYSYGILDQDEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgacccgttgaatccgcttattgtgcaggcggaccgaagcgtgtttctggaa
gcatttaatccgcgtgcagaggcggcgcgcactgatattgcgccgtttgcagaactgatc
agcagtcccgaacatctgcacacgtaccgggtcacgcccctgtcattatggaacgcggcc
agcgcgggcctgacggcaaacggcatcatggaggccctggcccggcacgccaaattccct
ctccctgacaatgtggctacggacgtccgcgagctcgtgggccgctggggccgcctaaag
ctggaacggtacgactccgcgctgctgttgatcgtcgcggctggcgacgaagccctgctg
actgaactcgggcgccacaaggagatcaggccgctgctgggcgaggtcatgtcgtccacc
gtggtgaccgttccggcggcccaccggggggtgcttaagcagcagctgatcgaggttggc
tggccggtggatgatcaggcaggctacaccgatggcgccgccttcgcagtgcggctgtcg
tcgtcgcttcaggtgcgcgactatcagcgcgaagccgccgaggcgttctaccgcgccggc
agcgagcagggtgggtcgggtgtggtggtcctggccccaggcgcaggaaaaacggtggtg
ggcatggccgccatgagcctggtcgggcagcggaccctggtgctgaccaccaaccggacc
agcgtcaatcagtggcaccgggaactcctgaacaaaaccgacctgagccccgaggacgtc
agcgagtacgccgccgggaaagcactgaccccagtgacgctgtgcacctaccagatgctc
acccaccgcaagcggagcagtctgagtggggaggacggcgcctacccgcatctggcattg
atcggggcttctgaatgggggctgatcatttacgacgaggttcatctgctgccggctccg
gtgttccgcctcaccgccgaagtccaggcccgccgccgcctgggcctgaccgccaccctg
atccgcgaggacggccgcgaaggcgacgtgttcgcgctcatcggccccaagcgctatgac
cagccctggaagaccctggaagcgcagggctggattgcccaggctcactgcctggaagtc
cggctgcgtctgccgcctgaagagcgtgtgcagtacgcggtcgccccggaccaggacaag
caccgcattgccgccgagaacccagtcaagcgcacggtcctgcggcaggtgatggcgcgg
cacagcggcctgccgacgctgattatcggccagttcctggatcagcttgaactgataggc
gccgacctggaggtccccgtgatcaccggcaagacgccgcagcgcacccgcgagaccctc
ttccaggcgttccgggagggccacctgaagacgctggtgctgtccagggtcggcaacttc
gcgctggatctgcctgacgccgagcttcttattcaggtgtcaggtgccttcgggtcgcgg
caggaggaagcgcagcgcctggggcggctgctgcgccccaaggccgacggccgcgccgcc
tatttctattctctggtcacccgcgaaaccagcgaggaggactttgcccaccaccgccag
ctgtttctggccgcacagggctactcttacggcattctggatcaagatgaggtttga
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