Dendrobates tinctorius (dyeing poison frog): 141051787
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Entry
141051787 CDS
T11000
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dtc Dendrobates tinctorius (dyeing poison frog)
Pathway
dtc03013
Nucleocytoplasmic transport
dtc03015
mRNA surveillance pathway
dtc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dtc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141051787 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
141051787 (DDX39B)
03015 mRNA surveillance pathway
141051787 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtc03019
]
141051787 (DDX39B)
03041 Spliceosome [BR:
dtc03041
]
141051787 (DDX39B)
Enzymes [BR:
dtc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141051787 (DDX39B)
Messenger RNA biogenesis [BR:
dtc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141051787 (DDX39B)
Spliceosome [BR:
dtc03041
]
Complex C
Other components
EJC/TREX
141051787 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141051787 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141051787
NCBI-ProteinID:
XP_073404913
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDEVDNQTGGDAPDIAPKKEMKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HIRELAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEDMIKKSCPHIVVGTPGRILALA
RSKTLNLKHIKHFILDECDKMLEQLDMRKDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMGQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaccgatgtggacaacgaactcctggactatgaagacgacgaggtcgacaac
cagaccgggggtgacgctccggacattgcccccaagaaggagatgaagggatcctacgtg
tccatccacagctccggattcagagattttctcctaaaacccgagttgcttcgggctatc
gtggactgtggtttcgagcatccgtcagaagtacaacacgagtgcatcccccaagccatc
ctgggcatggacatcctgtgccaggcaaagtcagggatggggaaaaccgcagtgtttgtc
ttggccacattacagcagctggaaccgatcacaggacaggtttccgtgttagtcatgtgt
cacatcagagagctggccttccagatcagcaaagagtacgagcgattctccaaatacatg
ccgtccgtcaaggtggcagtgttctttggcggccttgctattaagaaggacgaggatatg
ataaaaaagagctgcccccatattgtggtgggcaccccgggccgaatcctagccctggca
agaagcaagaccctgaatctcaaacacatcaaacactttatcttggacgaatgtgacaag
atgttggagcagttagacatgcgcaaagacgttcaagaaatcttccgtatgactcctcat
gagaagcaggtcatgatgttcagcgcaactctgagcaaggagatccgtccagtctgccgc
aagttcatgcaagatccgatggaaatcttcgtggatgatgagaccaagctgacccttcac
ggcctgcagcaatactacgtcaaactcaaggacaatgagaaaaaccgcaaactttttgac
ctcctggacttgttggagttcaatcaggtggtcatcttcgtgaagtctgttcagcgctgc
atcgctctggctcagctcctggtggagcagaactttccggcaatcgctattcaccgtggg
atgggacaggaggagaggctctcccggtatcagcagttcaaggatttccagcgcagaatt
ctggtggccaccaatctgtttggtcgcgggatggatattgaaagagttaacattgccttc
aattacgacatgcctgaggactccgatacttacctgcatagggtggcccgagcaggcagg
tttggtaccaagggtcttgccatcacgtttgtctccgatgaaggagatgccaaaatcctg
aatgaggttcaagatcgctttgaggtgaacatcagcgagctgcccgacgagatcgatatt
tcgtcatacattgaacagacccgatga
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integrated database retrieval system
