KEGG   Dendrobates tinctorius (dyeing poison frog): 141055141
Entry
141055141         CDS       T11000                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dtc  Dendrobates tinctorius (dyeing poison frog)
Pathway
dtc03030  DNA replication
dtc03410  Base excision repair
dtc03420  Nucleotide excision repair
dtc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dtc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    141055141 (LIG1)
   03410 Base excision repair
    141055141 (LIG1)
   03420 Nucleotide excision repair
    141055141 (LIG1)
   03430 Mismatch repair
    141055141 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dtc03032]
    141055141 (LIG1)
   03400 DNA repair and recombination proteins [BR:dtc03400]
    141055141 (LIG1)
Enzymes [BR:dtc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     141055141 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     141055141 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     141055141 (LIG1)
DNA replication proteins [BR:dtc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    141055141 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     141055141 (LIG1)
DNA repair and recombination proteins [BR:dtc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     141055141 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     141055141 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     141055141 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 141055141
NCBI-ProteinID: XP_073408223
LinkDB
Position
Unknown
AA seq 903 aa
MQRSIKSFFQPKAEAVIKKENQLAETELGPKENKSCIKGKSNERLLREKNGKSSEEDADS
PIKCVLKKSAQDLRSESEDEELMDVEVSIAAKDIKPESKVDPIGVVSVSGSSPSPNTSGR
TGSPDVSGFSIPKRKTARKQLPKRKLESADEKPTPQKDERNVQETSAKRQLQETDLKSIK
LEQKEDADSLVIKSSEQVQEKIALSHTSLKPHQEKAEKCTAEKSPAPAKGSKNTGSFFGT
SKQDVTQKETDYNPSKSGYHPIKDACWNIGQMVPYLALARTFEMIENESARLKNIETLSN
FLRSVICLSSGDLLPCIYLCLNRLGPAYEGLELGIGETVLMKAVAQATGRQLDKIKAEAQ
EKGDLGLVAESSRGTQRTMFTPPKLMVPGVFSKLKEIARMTGNAAMNKKIDIIKGLFVAC
RQSEARYIARALGGKLRIGLAELSVLSAIAQAVSLTPPGQSFPDGVCDASKGMSIDAKKA
WIEENAMILKQTYCELPNYDLVIPTLLKHGIKELPQHCKLTPGVPLKPMLAHPTKGVGEV
LKRFEEAAFSCEYKYDGERAQIHILENGEVHVYSRNQENNTTKYPDIVGRIPQVRKTTVK
SCIFDSEAVAWDPQKKQIQPFQVLTTRKRKDVEASDIKVQVCVYAFDMLYLNGESLVREP
FSRRRKLLRESFTELEGQFMFATYMDTSNTDEISEFLDQSIKDSCEGLMVKTLEQNATYE
IAKRSHNWLKLKKDYLEGLGDTLDLVVIGGYLGKGKRTGIYGGFLLASYDEESEEYQTIC
KIGTGFTDEDLEKHHCFLKDHVLDSPRSYYRWDSATEPDYWFEPVQVWEVKCADLSVSPV
HKAAIGLVEDEKGISLRFPRFLRIREDKKPEEATNSSQVAELYKKQQQIQNVSATQKEDD
DFY
NT seq 2712 nt   +upstreamnt  +downstreamnt
atgcagcgcagtataaagtcgttttttcaacccaaagcagaagccgttataaagaaagaa
aaccaattagctgagactgagcttggacctaaagaaaataaatcttgcatcaaagggaaa
agtaatgaacgtctgctgagagaaaaaaatggtaaatcatccgaagaagacgccgattct
cccataaaatgtgtgttaaagaaatcggcgcaagatttgagaagcgaaagtgaagatgaa
gaattgatggatgttgaagtgtcaattgcagcaaaagatattaaacctgaatcaaaggtg
gaccccattggagtagtctctgtttctggcagcagcccttcccccaacacctctggtcgc
actgggtcacccgacgtgtcgggctttagcatccctaagcggaaaacagcacgtaagcag
ttaccaaagaggaaactagaaagtgctgatgaaaaacccaccccacagaaggacgaacgt
aatgtccaagaaacaagtgcaaagcgtcagctgcaagaaaccgatctaaaatctattaag
ttggaacagaaagaagatgctgatagtcttgtcattaaatcttcggagcaggtacaagaa
aaaatagctttaagtcatacatctttaaagcctcatcaagaaaaggctgaaaaatgtact
gcagaaaagtctcctgctccagcaaaggggtcgaaaaacactggcagcttttttggtacc
tcgaagcaggatgttacacagaaagagactgactacaatccttcaaaaagtggctaccat
ccaataaaggatgcctgctggaatattggccaaatggttccatatttggcacttgcacgc
acttttgagatgatagaaaatgagtcagctcgcttaaaaaacattgaaacattgagtaat
tttctgcgctctgtcatctgtttgtcttcgggggacctcttgccatgcatttatctctgt
ctgaaccgtctgggtcccgcctacgaaggcctggagcttgggattggagagacagtatta
atgaaggctgtagcacaagcaacaggtcgacagttagacaaaattaaggctgaagctcag
gagaagggagacctaggacttgttgctgaaagcagtcgtggtactcagcgaaccatgttc
acacctcccaagctcatggtcccaggtgttttcagcaaactaaaagagatcgccaggatg
actggtaacgctgctatgaacaagaagattgatatcattaaaggattgtttgtggcgtgc
agacaatctgaagcacgttacatagctagagctttaggaggaaaactccgaattggactg
gcagagctgtctgttctttcagctattgcccaagcagtttctctaacacctcctggacaa
tcatttccagatggagtatgcgatgcttcaaagggaatgagcatagatgccaaaaaagct
tggattgaagagaacgccatgattttgaagcagacatactgtgagttgccaaactatgat
ctggttattcctaccctactgaagcatggcattaaggagcttcctcaacactgtaaactt
actccaggggtgcctttaaagcccatgttggcacaccctaccaagggcgttggtgaagtt
ttaaaaaggtttgaagaagctgccttttcctgtgaatataagtacgatggagagcgtgcc
cagatacatatactagagaatggtgaagttcatgtctacagcaggaaccaagaaaataac
acaactaaatatccggatatcgttggcaggattccacaggtgaggaaaaccacagtgaaa
tcctgcatctttgactcagaagccgtcgcatgggaccctcaaaaaaagcaaatccagcct
tttcaagttctgactacaagaaaacgaaaggatgttgaagcttctgacataaaagtccag
gtctgtgtgtatgcttttgacatgctgtacctcaatggagagtctttagttagagagcca
ttttctaggcgaaggaaactactgagagaatcctttactgaactagaaggacaattcatg
tttgctacgtatatggatacttcaaacacagatgaaatttctgaatttcttgatcagtct
ataaaagattcttgtgaaggcttgatggtaaaaacgctggaacaaaatgcaacatatgaa
attgccaaacgttctcataattggttaaagttgaagaaagattatttagaaggtttagga
gacaccctggatttagtggtaattggtggttatctgggaaaaggaaagagaactggcata
tatggaggatttctccttgcatcatatgatgaagaaagtgaggaatatcagaccatttgc
aagattggaacaggctttacagatgaagacttggaaaagcatcactgttttctaaaggat
catgttcttgacagtccaagaagttactaccgctgggacagtgctacagagccagattat
tggtttgaacctgttcaagtctgggaagtaaaatgtgcagatctttctgtttctcctgtt
cataaagctgcaattggactggtggaagatgaaaagggaatctctctgcgtttccctcgc
ttccttcgcattcgagaagataaaaagcctgaagaagcaacaaacagttctcaggttgca
gaactgtacaaaaagcagcagcaaatacaaaatgtgtctgcaacacagaaagaagatgac
gacttctattag

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