Dendrobates tinctorius (dyeing poison frog): 141073477
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Entry
141073477 CDS
T11000
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
dtc Dendrobates tinctorius (dyeing poison frog)
Pathway
dtc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141073477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtc03019
]
141073477
03036 Chromosome and associated proteins [BR:
dtc03036
]
141073477
Enzymes [BR:
dtc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141073477
Messenger RNA biogenesis [BR:
dtc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
141073477
mRNA degradation factors
5'-3' decay
Decapping complex
141073477
Chromosome and associated proteins [BR:
dtc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
141073477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
141073477
NCBI-ProteinID:
XP_073416811
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MSTTRTENPVLMGLSSQNGQLRGPVKPNQGPGSGGMQTQQISQLKNASTINNGSQQQAQS
MSSAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQ
MIVLDEADKLLSQDFVQIMEDIIMTLPKNRQILLYSATFPLSVQKFMSSHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGMCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKSLYVAEYHSESGEEK
H
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccacaagaacagagaaccctgttttaatgggtctgtccagtcagaatgggcaa
ttgaggggcccagtgaagcctaatcaaggccctggaagtgggggaatgcagacacagcaa
ataagccagctgaaaaacgccagcacaatcaataacggaagtcagcagcaagcacagagc
atgagcagcgctattaaacctggtgatgactggaagaagacattaaaactcccaccaaaa
gatcttcgaataaagacttcagatgtcacctccacaaaaggcaatgagtttgaagattac
tgtttaaaacgagagctgctcatggggatttttgaaatgggatgggagaagccgtcccca
attcaggaggaaagcattcccattgcattgtctggtagggatatattggctagagcaaaa
aatggaactggcaagagtggagcctacctcattcccttacttgaacggctagacctaaag
aaggactgcatacaagcaatggttattgtacccactcgagagcttgcgcttcaggtcagt
cagatctgcattcaagtaagcaagcacatgggaggggttaaagttatggcaacaaccgga
ggcaccaatttacgagatgatataatgaggctggatgatacagttcatgtggtgatcgct
actccagggaggattctggatcttataaaaaaaggtgtagctaaagtggaccacattcag
atgatagttctggatgaggcggataaactgctttctcaagattttgtacagataatggaa
gatataattatgacgctacctaaaaacaggcagattcttctttattcagccacctttccc
ctcagtgtccagaaatttatgtcctctcatttgcaaaaaccctatgaaattaacctgatg
gaggagcttacactgaagggggtaacgcagtactatgcctatgtgacagagaggcaaaag
gttcactgtttgaatacacttttttcaagactccagataaaccagtctataatcttctgc
aactcctcccagcgggtagagctgttggcgaagaaaatctcccagttgggttattcctgc
ttctatatccatgccaagatgagacaggagcacaggaatagagttttccatgatttcaga
aatggaatgtgccgtaaccttgtttgcactgatttgtttacccgtggtattgatatccaa
gctgtgaatgtggtgataaactttgactttccaaagctggcagagacctatcttcatcgc
ataggcagatcaggtcgttttggccaccttggacttgctattaatttgatcacctacgat
gacagatttaaccttaaaagtattgaagaacagctgggaacagaaatcaaacccataccc
agcagtatcgacaaaagcctgtatgtggcagaatatcacagcgagtctggagaagagaag
cattaa
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