Dendrobates tinctorius (dyeing poison frog): 141100361
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Entry
141100361 CDS
T11000
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dtc Dendrobates tinctorius (dyeing poison frog)
Pathway
dtc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dtc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141100361 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtc03019
]
141100361 (XAB2)
03041 Spliceosome [BR:
dtc03041
]
141100361 (XAB2)
Messenger RNA biogenesis [BR:
dtc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141100361 (XAB2)
Spliceosome [BR:
dtc03041
]
Complex B
Other components
Prp19-related factors
141100361 (XAB2)
Complex C
141100361 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
TPR_19
ARM_TT21
ARM_TT21_C
TPR_21
ANAPC3
CCDC84
TPR_1
Tcf25
NRDE-2
Motif
Other DBs
NCBI-GeneID:
141100361
NCBI-ProteinID:
XP_073444895
LinkDB
All DBs
Position
Unknown
AA seq
838 aa
AA seq
DB search
MPEKEIAFEEDDLQFEEEILRNPYSVKCWMRYIESKLSAPAHTLNLIYERALKELPGSYK
LWYAYLKQRRKQVKRRCITDPAFEEVNNCHERALVFMHKMPRIWLDYCQSLMDQCKITRT
RRTLDRALRALPITQHHRIWPLYLRFVRAHTLPETAVRVYRRYLKLSPENAEEYIEYLRS
VDRLDEAASRLATIVNQDDFVSKEGKSNYQLWQELCTLLSQHPGSVHSLNSAAIIRGGLT
RFTDQRGKLWCALAEYHTRSGHFEKARDVYEEAIQTVTTVRDFTQVFDSYAQFEESIIAA
KMETVSEMGKEEEDDLDLELRLARFEQLMERRPLLLNGVLLRQNPHNVHEWHKRVQLYQG
KPREIINTYTEAVQTVNPVRATGKPHSLWVAFAKFYEDNGQIDDARAILQRATQVQYTHV
DDLASVWCQFGEMELRHENYDEALTILRKSTAIPARKAEYFDASEPVQNRLYKSLKVWSM
LADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYALFLEEHNYFEESFKAYERGIALFR
WPNVYDIWSTYLSKFIARYGGKKLERARDLFEQALDGCPRKFAKNIFLLYAKLEEEHGLA
RHAMALYERATQAVEREEQYEMFNIYIKRAAEIYGVTHTRSIYERAIEILPDDQAREMCL
RFADMECKVGEIDRSRAVYSYCSQMCDPRLTTVFWQTWRDFEVRHGNEDTLREMLRVKRS
VQAKYNTQGTFLVSQRLRAEGGGANEDSKEPADEMQALEQRAAIVAAEAEKDKPQMKEKI
LFVRSDASRTELAELTLQNNPDEINIGDEDSEEELEPDEVQLEQKLVPSSVFSGLADD
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgccggagaaagaaatcgcgtttgaagaagatgacttgcagtttgaggaggagatcctg
cgcaatccctactctgtcaagtgctggatgcgatatatcgaatccaagctctccgccccg
gcgcacaccctcaacctgatctacgagagggcactgaaggagcttcccgggagctacaag
ttatggtatgcctacctaaagcagcgcaggaagcaggtgaagaggaggtgcatcaccgat
ccggccttcgaggaggtgaataattgccatgagagagccctggtcttcatgcacaagatg
ccccgcatatggctggattactgccagtccctcatggaccagtgtaaaattacccgcaca
agaaggacgttggaccgggctctacgtgctcttcccatcacccagcaccatcgtatctgg
cccctttacttacgctttgtccgtgcacacaccctaccagagactgcagtcagggtttac
aggaggtacttgaagctgtctcctgagaacgcagaggagtacatcgaatatctgcgctct
gttgacagattggatgaagcagcgtccagattggcaaccattgtgaaccaagatgacttt
gtatcaaaggaaggaaagtcaaattatcagctatggcaggagctttgcaccctcctgtcc
cagcacccaggttctgtccactctcttaactctgcagccatcattcgaggcggcttgacc
cgctttacagaccagaggggaaagttgtggtgcgcacttgccgaatatcatacccgcagt
ggccattttgaaaaggcccgagatgtctacgaggaggccattcagaccgtcacaactgtg
cgagacttcactcaggtgttcgacagttacgctcagtttgaagaaagcatcattgctgcc
aaaatggagacagtcagtgagatggggaaagaagaggaggatgacctggatctggagctg
aggttggctcgatttgagcagctgatggagcggagaccccttttacttaacggggtgtta
ctacgacagaacccacacaatgttcatgagtggcacaagagggtgcagctataccaaggc
aagccacgagagattattaacacctacacagaagctgtccagactgtgaacccggtgagg
gcaactgggaaaccgcactctttatgggtggcattcgccaagttctacgaggacaatgga
caaatagatgacgctcgggcgatactgcagagagcgacgcaggtgcagtacacgcatgtg
gatgacttggcctcggtttggtgccagtttggcgagatggagctgagacatgagaattac
gatgaagctctgactatattaaggaaatccacggcgatacctgcccgcaaggctgaatat
tttgatgcctcggagccggtgcagaatagactgtacaagtccctgaaggtctggtccatg
ctggcggacctggaggaaagtctgggcactttcaagtccactaaggcggtatatgatcgc
attattgaccttcgcatagctaccccgcagatcatcatcaattacgccctcttcttggag
gaacacaactactttgaagaaagtttcaaggcctatgagcgtggcatcgccctcttccgg
tggcccaacgtttacgacatctggagcacttacctgtctaagttcatagctcgctatgga
gggaagaagctggagagagctcgggacctctttgaacaagccttagatggttgtccacga
aagtttgcaaaaaatatatttctactgtatgcaaaactggaggaagaacacggtctggcc
cggcacgccatggctttgtacgagcgagcaactcaggcggttgaaagagaagagcagtat
gagatgtttaacatttacattaagagagcggctgaaatatatggcgtcacacacacccgc
agtatttatgagcgagccattgagattttgccggatgaccaggcccgggagatgtgtcta
cggtttgctgacatggagtgtaaagtaggagagattgaccgcagccgagccgtttattcc
tattgctctcagatgtgtgatccccggttgaccacagtgttttggcagacctggagagac
tttgaggtccggcacggtaacgaagacaccctgcgtgagatgctgcgggtgaagcgtagc
gtgcaagccaagtataacacacaggggaccttccttgtgtctcagaggttgagggccgaa
ggaggaggtgcaaatgaggacagcaaagaaccagcggatgagatgcaggctctggaacag
agagcggccatagtggcagcagaagctgagaaggataaacctcagatgaaggagaagatc
ctctttgtcagatctgatgcctcccgcacagagttagcagagctgacgcttcaaaataat
ccagacgagataaatattggagatgaagattcggaagaggagctggagccggacgaggtg
cagctggagcagaagttggtcccttcttctgtattctctggtcttgctgatgactga
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