Dyella thailandensis: ACQVBX_10200
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Entry
ACQVBX_10200 CDS
T11632
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dtd Dyella thailandensis
Pathway
dtd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dtd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACQVBX_10200 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtd03021
]
ACQVBX_10200 (rpoB)
03400 DNA repair and recombination proteins [BR:
dtd03400
]
ACQVBX_10200 (rpoB)
Enzymes [BR:
dtd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACQVBX_10200 (rpoB)
Transcription machinery [BR:
dtd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACQVBX_10200 (rpoB)
DNA repair and recombination proteins [BR:
dtd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACQVBX_10200 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF3231
Motif
Other DBs
NCBI-ProteinID:
XUQ30257
LinkDB
All DBs
Position
complement(2189192..2193352)
Genome browser
AA seq
1386 aa
AA seq
DB search
MTYSFTEKKRIRKDFGKRPPVLGVPNLLTIQTDSYREFLQEHVAPKQREEKGLHAALKSV
FPITSYSGNAALEYVDYRLGEPAFDERECRNRGMTFGAPLRVTVRLVIYDKDSPASKKAV
KYVKEQEVYMGEIPLMTDTGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYTNEEMLGIFFEHNVFHLGK
KGGTTLELVAERLRGETLSFDLMVGDKVLVEAGKRITARHVRQLAAENITALEVPDDYPV
GRILAIDVVDPKTGELLASANDEITAEQLEAFRKAGIETLPTLYVNDLDRGAYISHTLRI
DNTKTPLEALVEIYRMMRPGEPPTKDAAQNLFFNLFFTFDRYDLSGVGRMKFNRRVGRQD
ILGPGVLYDYKYFADRKEEASQELVKSLGESSDILDVLKVLIDIKNGHGTVDDIDHLGNR
RVRSVGEMAENTFRIGLVRVERAVRERLSLAESDGLTPQDLINAKPVAAAVKEFFGSSQL
SQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGL
INSLAVYARTNSYGFLETPYRKVEGGKVTDKVDYLSAIEEGDHVIAQANSPLDKHGAFIE
DFVSCRFRGESELRPAAEVDYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVP
TLRSQTPLVGTGIERAVARDSGVIVTAKRGGEIEQVDAARIVVRVNEEEVGDNDAGVDIY
TLTKYTRSNQNTNLNQRPLVNVGDVVAKGDTLADGSSTDLGELALGQNMLIAFMPWNGYN
FEDSILLSERVVQEDRYTSIHIEELSCIARDTKLGAEEITADIPNVGEQALARLDESGIV
YIGAEVKAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRAKQIEEMEIKRIRKDLDDQFRILEGAIYNRMRTQLVGKSAMSGPGGL
KRGTEITDAYLDGLKKDDWFKINVKDEDVTEFLERAADQIKRHKEEFDKRFKEKQGKITQ
GDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMADGTSVDICL
NPLGVPSRMNIGQILEVHLGWAAKGLGKKIQKMLEAREKVTKVREFLDQIYNHHVSGAVQ
HVDLKSLTDEEIFTLANNLQEGVPMATPVFDGAEESEIKAMLKLADLPESGQTTLFDGRT
GEAFDRPVTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMTAGMPESFNVLVKEIRSLGIDI
DLEEIK
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgacctactcgtttaccgagaagaagcgcatccgcaaggatttcggcaagcgtccgccc
gtgctgggcgtgcccaacctgctgacgatccagaccgactcctaccgtgagttcctgcag
gagcatgtcgcgcccaagcagcgcgaggagaagggtctgcatgcggccctgaagtcggtg
ttcccgatcaccagctattccggcaacgccgcgctggaatacgtggactaccgcctgggc
gagccggcattcgacgagcgcgagtgccgcaaccgcggcatgacgttcggcgcgccgctg
cgcgtgaccgtgcgcctggtcatctacgacaaggacagcccggcctcgaagaaggcggtc
aagtacgtcaaggagcaggaggtctacatgggcgagatcccgctcatgaccgacaccggc
accttcatcatcaacggcaccgagcgcgtcatcgtctcgcagctgcatcgttcgccgggc
gtgttcttcgaccacgaccgcggcaagacgcacagctcgggcaagctgctgttctcggcg
cgcgtgatcccctaccgcggctcctggctggacttcgagttcgatccgaaggacgcgctg
ttcacccgcatcgaccgtcgccgcaagctgccggtgacggtgctgctgcgcgcgctgggc
tacaccaacgaggagatgctgggcatcttcttcgagcacaacgtgttccacctgggcaag
aagggcggcaccacgctggagctcgtcgccgagcgcctgcgcggcgagacgctgagcttc
gacctgatggtcggcgacaaggtgctggtggaagccggcaagcgcatcactgcgcgccac
gtgcgccagctggcggccgagaacatcaccgcgctggaagtgccggacgactacccggtc
ggccgcatcctggcgatcgacgtggtcgacccgaagaccggcgagctgctggcttcggcc
aacgacgagatcaccgccgagcagcttgaggccttccgcaaggcgggcatcgagacgctg
ccgacgctgtacgtgaacgatctcgatcgcggcgcgtacatctcgcacaccctgcgcatc
gacaacaccaagacgccgctggaggcgctggtggagatctaccgcatgatgcgtccgggc
gagccgccgaccaaggacgccgcgcagaacctgttcttcaacctgttcttcacgttcgat
cgctacgacctgtcgggcgtcggccggatgaagttcaaccgccgcgtgggtcgccaggac
atcctcggtccgggcgtgctgtacgactacaagtacttcgccgaccgcaaggaagaggcg
tcgcaggagctggtcaagtcgctcggcgagtcgtccgacatcctcgacgtgctcaaggtg
ctgatcgacatcaagaacggccacggcaccgtcgacgatatcgaccacctgggcaaccgt
cgcgtgcgttcggtcggcgaaatggcggagaacaccttccgcatcggcctggtgcgcgtg
gagcgcgccgtgcgcgagcgcttgagcctggccgagtccgatggcctgaccccgcaggac
ctgatcaacgccaagccggttgcggcggcggtgaaggagttcttcggctcgtcgcagctg
tcgcagttcatggaccagaacaacccgctgtcggaagtgacccacaagcgccgcgtgtcg
gcgcttggaccgggcggtctgacccgcgagcgtgccggcttcgaagtgcgcgacgtgcat
ccgacccactatggccgcgtctgcaccatcgagacgccggaaggcccgaacatcggcctg
atcaactcgctggcggtgtacgcccgcaccaactcgtacggcttcctcgagacgccgtac
cgcaaggtcgagggtggcaaggtcaccgacaaggtcgattacctctccgcgatcgaggag
ggcgaccacgtgatcgcccaggcgaactcgccgctggacaagcatggcgccttcatcgag
gacttcgtgtcctgccgcttccgcggcgagtccgagctgcgcccggcggccgaagtcgac
tacatggacgtttcgcccatgcagaccgtgtcggtggcagcggcgctggtgccgttcctc
gagcacgacgacgcgaaccgcgcgctgatgggcgcgaacatgcagcgccaggccgtgccg
acgctgcgttcgcagaccccgctggtcggtaccggcatcgagcgcgccgtggcgcgcgac
tcgggcgtcatcgtcaccgccaagcgcggcggcgagatcgagcaggtcgacgcggcgcgc
atcgtggtgcgcgtgaacgaggaagaggtcggcgacaacgatgccggcgtcgacatctac
acgctgaccaagtacacccgctccaaccagaacaccaacctcaaccagcgcccgctggtg
aacgtgggtgacgtggtggcgaagggcgacacgctggccgacggttcgtcgaccgacctg
ggcgagctcgcgctcggccagaacatgctgatcgccttcatgccgtggaatggctacaac
ttcgaagactcgatcctgctgtccgagcgcgtggtgcaggaagaccgctacacctcgatc
cacatcgaggagctgtcgtgcatcgcccgcgacaccaagctgggcgccgaggaaatcacc
gccgacatcccgaacgtgggcgaacaggcgctggcgcgcctggacgagtccggcatcgtg
tacatcggcgcggaagtgaaggccggcgacatcatggtcggcaaggtcacgcccaagggc
gaaagccagctcacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcgtcc
gacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcacggtcatcgacgtg
caggtgttcacccgcgacggcatcgagaaggacaagcgcgccaagcagatcgaggaaatg
gagatcaagcggatccgcaaggatctggacgatcagttccgcatcctcgagggcgcgatc
tacaaccgcatgcgcacccagctcgtcggcaagtcggcgatgagcggtccgggcggcctg
aagcgcggcaccgagatcaccgacgcctacctggacggcctgaagaaggacgactggttc
aagatcaacgtgaaggacgaggacgtcaccgagttcctcgagcgtgctgccgaccagatc
aagcgccacaaggaagagttcgacaagcgcttcaaggagaagcagggcaagatcacccag
ggtgatgaccttgctccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgc
cgcatccagccgggcgacaagatggccggtcgccacggcaacaagggcgtggtgtccaac
gtggtgccggtggaggacatgccgtacatggctgacggcacctcggtcgacatctgcctg
aacccgctgggcgtgccttcgcgtatgaacatcggccagattctggaagtccatctgggc
tgggccgccaagggcctgggcaagaagatccagaagatgctcgaggcgcgcgagaaggtg
acgaaggtccgcgagttcctcgatcagatctacaaccaccacgtctccggcgccgtgcag
cacgtcgacctcaagtcgctcaccgacgaagagatcttcacgctggcgaacaacctgcag
gaaggcgtgccgatggcgacgccggtgttcgacggtgccgaggaatccgagatcaaggcg
atgctgaagctggcggatctgcccgagtcgggccagaccacgctgttcgacggccgcacc
ggcgaggcgttcgatcgcccggtcaccgtgggctacatgcactacctgaagctcaaccac
ctggtcgacgacaagatgcacgcgcgctccaccggtccgtactcgctcgtcacccagcag
ccgctgggcggcaaggcgcagttcggcggccagcgcttcggtgagatggaagtctgggcg
ctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgac
gtgcagggccgcaaccagatgtacaagaacatcgtcgacggcaaccacgagatgacggcg
ggcatgccggagtccttcaacgtgcttgtgaaggaaatccgttcgctcggtatcgacatc
gacctggaagagatcaagtaa
DBGET
integrated database retrieval system
