Desulfurobacterium thermolithotrophum: Dester_0628
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Entry
Dester_0628 CDS
T01427
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dte
Desulfurobacterium thermolithotrophum
Pathway
dte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dester_0628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dte03019
]
Dester_0628
Messenger RNA biogenesis [BR:
dte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dester_0628
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
ATP-synt_B
KH_KhpA-B
HDOD
TraC_F_IV
MurD-like_N
O-ag_pol_Wzy
VTT_dom
LapA_dom
Motif
Other DBs
NCBI-ProteinID:
ADY73279
UniProt:
F0S357
LinkDB
All DBs
Position
complement(638031..639704)
Genome browser
AA seq
557 aa
AA seq
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MELILVAILAILTGLTVGYIVGTKKSHIETEKIEKKIKEEAKEDAQKILEKAKEEASELK
EKAENLLREAKEKFEEMKKEAFLRAKEEILKEKEKLEEELKEKKRELSELEKRLLRREEY
LDKRESTLDKRENNLDRRADFLDKLEKELEEKKAEVERLEAELLEKDMKITQLIEEELRK
LEEIAGMSQEEAQEELMRRMEEEIRKDLAIRYKQIEEEFEQTVEKKAKRILATTIQRLAT
DQVAETTIAVVDLPNNEMKGRIIGREGRNIRAFELATGVDLIIDDTPEAVTISSFDPIRR
EVARIALERLVADGRIHPARIEEVVEKVREEIDQEILNAADEVLFELGIDNVHPELKKLL
GKLKYRTSYGQNVLQHVKEVAYLAGMMAAEIGADVQLAKRAGLFHDIGKAVTHEVEGSHA
LIGADILKKYGEPEAVINAAAAHHGEAEFTTVESVLAAVGDALSAARPGARRESLEAYIR
RIEKLESIAESFPGVMKAFAIQAGREVRIMVEPDRITDEEAAFLAHQISKKIEEEVQYPG
QIKITVIRETRAVDYAK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggagctaatacttgttgcgatactagcaattcttacaggacttactgttggttatata
gttggaacaaagaaaagtcatattgaaactgaaaagatagaaaagaagataaaagaagaa
gctaaggaagacgcacagaaaattcttgaaaaagcaaaggaagaagcttcagagttaaaa
gaaaaggcagaaaaccttttaagggaagctaaggaaaagtttgaagagatgaaaaaggaa
gctttccttcgtgctaaggaagagattctcaaagaaaaagagaaattagaagaagaacta
aaagagaagaaaagagagctctctgagttagaaaaaagacttcttcgaagggaagaatat
ttagataaaagagaatcaactcttgataaaagagaaaataaccttgataggagagcagac
tttcttgataagttagaaaaagagttagaagaaaaaaaggctgaagttgaaaggcttgaa
gcagaacttcttgaaaaagatatgaaaataacgcagctcatagaagaagaacttaggaaa
ctcgaagaaattgctggaatgagtcaagaagaagctcaagaagagctaatgaggcgtatg
gaagaagaaataagaaaagatcttgctattcgttataaacaaatagaagaagagttcgag
caaacagtagaaaaaaaggctaagagaatacttgcaactactatacagagacttgctact
gaccaagtagctgaaacaacaatagctgttgttgatcttccaaacaatgagatgaaagga
agaattattggtagagagggtagaaacattagagcttttgaacttgccacaggagtggat
ctcataattgatgacactcctgaagctgttacgatttcatcttttgatcctataagaaga
gaggttgcgagaattgctcttgaaagattggttgcagatggaagaattcatccagcaaga
atagaggaagttgtcgaaaaagttagagaggaaatagatcaagaaatactaaatgctgct
gacgaagttctctttgaacttggaattgataatgtccacccagaactcaaaaaacttctt
ggaaaacttaaatacagaacaagttatggtcaaaatgtccttcaacatgtgaaagaagtt
gcttatcttgcaggtatgatggctgcagaaataggagctgatgttcagcttgcaaaacgt
gcaggacttttccatgacatagggaaagcagtaacgcacgaagtagaaggctctcatgct
cttataggagcagatattcttaagaaatatggagaaccagaagcagtaataaatgctgct
gctgctcatcatggagaagcagaatttacaactgttgaatcagttcttgctgcagtagga
gatgctttaagtgccgcaagacctggagcaaggagagaaagtttagaagcttacattaga
agaattgaaaagcttgaaagtattgcagaatctttccctggtgtgatgaaggcgtttgct
atccaagctggtagagaagtaagaataatggttgagccagatagaattactgatgaagaa
gctgcttttcttgctcatcagatatcaaagaaaatagaggaagaagttcaatatcctgga
caaataaaaattactgtaataagagaaacgagagctgtcgattatgcaaaataa
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