Desulfurobacterium thermolithotrophum: Dester_0988
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Entry
Dester_0988 CDS
T01427
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dte
Desulfurobacterium thermolithotrophum
Pathway
dte03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dester_0988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dte03400
]
Dester_0988
Enzymes [BR:
dte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dester_0988
DNA repair and recombination proteins [BR:
dte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dester_0988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
ResIII
CarD_TRCF_RID
UvrB_inter
SNF2-rel_dom
Cas3-like_C_2
UB2H
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Zot
LysR_substrate
Motif
Other DBs
NCBI-ProteinID:
ADY73627
UniProt:
F0S455
LinkDB
All DBs
Position
complement(988957..992136)
Genome browser
AA seq
1059 aa
AA seq
DB search
MIKRSLKLLKGKVKNKELVKCYGLPGGSKGFILKEIKELISSFLFLVPSEVVAESIIEDL
KRFGLRVIYLPAWDVPPLDISSPLSLYQYRRLKSLYQLLSEPFNVLLLTPHSLFQKVILP
ENLIEYVIEIEKGKEIDYSLIPKKLTTLGYKRVDSEPEEGEFSIKGDTLELVSPEGERLV
AEFFGDTVEELYLNKEIIEKFVIIPTLELLQDREKLKKLEEIYPGVVERHFLLGEISGAE
KLLPDVFELVPVTEYIGGTLPAIVFEPDQVRTTGETFIKTVEENFELLKKEGIPSSKPEK
FVWKIDIKPIVSIYDKPVKDGIDFGIKPLPSVNDENIKELFKSLEGFKVKLFYTSETLKI
EAEKLSKKFGLDIQIEKGVSSGSFKIDERKEAWLTESEVVFETAKKEDITTLEPGTLVVH
RDYGIGIFQGIISRVIGNKTFDFIEIEYAGGERLYAPFTQIDRIYKYSGYKGKSPKLDKL
GGTSWKNLERKIKASLINFAKELAELYKERKSAKGEKILGDENLLREFERRFPYKPTPDQ
LKAIREVYKDMESEKPMDRLICGDVGFGKTEVAMRAAMKAVTDGRQVAVIVPTTILADQH
YRTFKKRFKGFPVKIEAISRFKTKKEQKEILEKLKNGEIDIIIGTHRLTQDDVEFKNLGL
LIIDEEHRFGVKTKEKLTKIKKNLDVLYLSATPIPRTLYSALSGFRDISVIETPPVGRRG
TKVVVSKYSDRILKTAVERELKRNGQVFIVQNDIDELEPLKIKVEEMFPNIPVDIVHGQM
KTEKIEKVMHKFFEGDIKILIATSIIESGLDIPSANTLIVIGAERFGLSQLYQLRGRVGR
GIEKGYCYLLTSSKGKLTPEAVKRLEAMKKVSPVGGGFQLAMKDLEIRGAGTLLGPKQSG
FVNTIGLDLYLKLFEEVTTEKEEEDVKITVPFEAFIPEDYIEDTKERLRIYGELSKSENP
EEILSEIEKVHGAIPDPLVNIFKIMKIKKLAKEIGIKEITMTPSGRLVIVFGESPNILPE
KLVEFVKSKDATFTPDKKLYMEAENLDKIIEILEEMMKG
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagaagtttaaagctacttaaaggtaaggtaaaaaataaagagttagttaaa
tgctatggtcttcctggaggatcaaagggttttatcttaaaggaaatcaaagagttaata
tcttcctttctatttttagttccttcggaagtagtagcagagtcaataatcgaggactta
aaaagatttggccttcgagttatttatcttccagcttgggatgtaccacctcttgatatt
tcatctcctttatctctttatcaataccgtagactaaagtctctttaccaacttctttca
gagccctttaacgtgcttcttttaacccctcactctctatttcaaaaagtgattttacct
gaaaacttaatcgaatatgttattgagatagaaaaagggaaggaaatagattattcgtta
attcctaaaaagcttacaactttgggttataaaagagtagatagtgaacctgaggaagga
gaattttcgataaagggagatactcttgagttagttagtcctgagggtgaaagattagtt
gctgagttttttggagatactgttgaagagctctatttaaacaaagaaataatagaaaag
ttcgtaatcattccaactttagagcttttgcaggatagagaaaaactaaaaaagttagaa
gaaatatatccaggagttgttgagcgtcatttccttttaggagaaatcagcggtgcggaa
aaactattacccgatgtttttgaacttgttccagtaacagaatatataggaggaactctt
cctgctatcgtttttgaaccagatcaagtaaggacaacaggagagacatttataaagact
gttgaagaaaattttgagcttttaaaaaaggagggtattccttcctcaaaaccggaaaag
tttgtttggaaaatagatataaaacctatagtgtctatatatgataaacctgttaaagat
ggaatagactttgggattaaacctcttccttctgtaaacgacgaaaacattaaagaactt
tttaaatccttagaaggttttaaagttaagcttttttatacttcagaaactttaaaaata
gaagcagaaaagctttctaaaaaatttggactagacattcaaattgaaaagggagtttca
tctggaagtttcaaaatagacgagagaaaagaagcttggttaactgaatctgaagtagtt
tttgaaacggctaagaaagaagatataacaaccttagaaccaggaactttagtggttcat
agagattatggaattggaatatttcaagggataatcagcagagtaataggaaataagact
tttgattttatagagattgaatatgcaggtggagaaagactctatgctccttttacccag
atagataggatttataagtattcaggatacaaaggtaaatctccaaaacttgataagctt
gggggaacttcctggaaaaatcttgaaagaaagataaaagcatctcttataaactttgct
aaagaactagcagaactttacaaagaaagaaagagcgcaaaaggagaaaagattttagga
gatgagaatcttctaagagaatttgaaaggcgttttccatacaaacctactcctgaccag
ttaaaagcaatcagagaagtttataaagatatggaatcagaaaaacctatggatagactt
atttgtggagatgttggttttggaaaaacagaagtagcaatgagagctgctatgaaagca
gtaacagatggtagacaggttgcagtcatagtaccaactactatacttgcagatcagcac
tacaggacatttaagaaaagatttaaaggttttcctgtgaaaatagaagcaatttcccga
tttaaaacaaaaaaagagcaaaaggagatacttgaaaaactaaaaaatggagaaattgac
ataattattggaactcatagacttactcaggatgatgtggaatttaaaaatcttggtctt
ttaataatagatgaagaacacaggtttggtgtaaaaacaaaagaaaagcttacaaagata
aagaaaaacctcgatgttctttatctttctgctactccaattccaagaactctttattct
gctttatcaggttttagggatatctccgtgatagaaactcctcctgtaggaagaagagga
acaaaagttgttgtttcgaaatactcagacagaattctcaagactgcagtagaaagagag
ctaaaaagaaacggtcaggtatttatagttcaaaacgatatagacgaactagaaccttta
aaaataaaagtagaagaaatgtttccaaatattcctgttgatattgttcatggacagatg
aaaactgaaaaaatagaaaaagtaatgcacaaattttttgaaggagatataaaaattcta
attgctacctctattattgaatctggtcttgatattccttcagctaacactcttattgta
attggtgctgaaagatttggactttcccaactttaccagctaagaggaagggtaggaaga
ggtattgaaaagggttactgctatcttcttacatcttcaaaaggaaaacttacaccagaa
gcagttaaaagacttgaagcaatgaagaaagtttcacctgtaggtggtggatttcaactt
gctatgaaagatttagaaattagaggtgcaggaactttacttggtcctaagcaaagtgga
tttgttaacacgataggtttagacttatacttgaaactatttgaagaagtaacaactgaa
aaagaagaagaagacgttaagataactgttccatttgaagcatttattcctgaagactat
atagaggatacgaaggaaagattaagaatttatggagagctctctaaaagcgaaaaccct
gaagaaatcctaagtgaaatagaaaaagttcatggagccattcccgatcctctcgtaaat
atattcaaaattatgaagataaaaaaattagcaaaagagataggcataaaggaaattaca
atgactccttctggaaggctagttatagtttttggtgaatcccctaatattcttcctgaa
aaacttgtagaatttgtaaaatctaaagatgcaactttcactccagataaaaaactttac
atggaagctgaaaatttagacaagataatagaaattcttgaagagatgatgaaaggatga
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