Desulfomonile tiedjei: Desti_1609
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Entry
Desti_1609 CDS
T02147
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dti
Desulfomonile tiedjei
Pathway
dti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desti_1609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dti03400
]
Desti_1609
Enzymes [BR:
dti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desti_1609
DNA repair and recombination proteins [BR:
dti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Desti_1609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFM24320
UniProt:
I4C429
LinkDB
All DBs
Position
complement(1919214..1922825)
Genome browser
AA seq
1203 aa
AA seq
DB search
MELMKTDPFPSTQSSSFEEAVNFLTKSADNGGVYGLVGSAPAFLIAAATRKSFRTIIVVM
PDGGAALSVASDIRFFLGEDEEYRYPLTDKVMRYPSSDMLPFTHAALENESWVERMSTLF
RLREPEPPRVVVVGLDALIRKLIPARAFDRASFTIALGSEIDRDELLERLVAAGYNRVPL
VEDAGDFSVRGFIIDLYSPLYPYPIRIEQSGDLIESMRFFDPTNQRSRDDVRQVLVAPVH
MLVPDTETRDEGLQRLLQACEDRGTEKRVRQRLIDDFRHGIRFPGAEFYIPYFFPALETL
LDYVPSDSTLVLPNEDILGRAFEDFEEEIRHGWENAAEDGYPVPDPDRVYLTQEDFFQRI
QRFRTVTVSPLEIHEPGAVSFRLNAQSNDNVRSELLQSKGYDSGMAKLVKRMESWRDDGY
ELFLVSHTQGQAHRLLKLLEPYGLNIDYRGTGFEPVNFDAEPTPGIRLYVGACSSGFKLD
QAHRIVLCEEEIFGSRVRSVPKKRARGTLISSLMDLAEGEPVVHEDYGIGIYRGLVRKEF
DGVVGEVMLIEYAGGDLLYHPVERLQVIQKYIAGSEEPPRIDKLGGKGWVKIKARIKKSI
KEMAGELLEIYAKRQVTRRSAYSPPDENFAAFEASFDFEETPDQARAIQDVMESMDTDMP
MDRLVCGDVGYGKTEVALRAAFRAIMDGRQVAVLVPTTVLAQQHFDTFKKRFRGYPFIVD
VLSRFRSNAEQKETLRQVEQGKVDLVVGTHRLLQKDVVFKDLGLLVVDEEQRFGVAHKER
VKKYKAHVDVLTLTATPIPRTLNLSLTGIRDLSVIETPPTNRQSIRTYVMRQSEEVVREA
LLKELNRGGQVFYVHNRVQSIARRTAALQKLVPEGRFCIAHGQMAERELEQVMVDFLTGK
YNILVCTSIIESGLDIPTANTIVIERSDTFGLADLYQLRGRVGRSHVRAYAYLLTPPETM
ITPDAVKRLSVMQEYSSLGQGFRIAMRDMEIRGAGNILGTSQSGHVSLVGYEMYLDLLED
AIQELKGEESAPRIDPEIHLKMEVYIPDDYVPDTQQRMNLYKRLSKAETNSEIEDTEEEI
FDLYGKPPIQVHHLIQVMRIRLAMKEIRILRLDYNGQDLVLTFDPDTPIRPETLVQWAQA
DHLVKIMPGDRLKYRIGKTNPDTRIKKCQELFSRLDHNRPESTDGEKSDKEHFRATVRIR
RRS
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttggaactcatgaaaactgacccattcccttcgacacaatcttcttcttttgaagaggca
gtaaattttctgacgaaatccgccgataacggcggggtctatggcttagtgggctcggct
cctgcattccttatagctgcggctacgaggaaaagcttcaggacaataatcgtcgtgatg
cccgacggaggagcggccctcagtgttgcctcggatattcgattttttctcggtgaagac
gaggaatacagatatcctcttaccgacaaggtgatgcgctatccttcctcggacatgctc
ccgtttacccatgcggcactggaaaacgagtcgtgggtcgaacggatgtccaccctcttc
aggctgagagaacccgaaccacccagggtagtggtggtcggcctggatgcattgattcgc
aagctcatacccgcgcgtgcattcgatcgagcgtcgtttacgatcgccttgggcagcgag
atagaccgcgacgaattgttggaacgtctggttgcagccggttacaaccgggtccccctc
gtggaagatgcgggagacttctctgtacgcggtttcattatagatttgtactcccctttg
tatccttatccgattcgtatcgagcagagcggcgacctgatcgagtccatgcggtttttc
gatcccacgaatcaacgttcacgggacgatgttcgacaggttcttgtcgctcctgttcac
atgctcgtgcctgatactgaaaccagagacgaaggtttgcagcgactattacaggcctgc
gaagacagaggcacggaaaagcgtgtaagacagcgtctcatcgatgattttcgccatggc
atacgctttccgggcgcagagttttacatcccctatttcttccccgcgctggaaacgctc
ctggactatgtcccctcggatagtactcttgtgctcccgaatgaagacattctggggcgt
gcatttgaggactttgaggaggaaatcaggcacggttgggagaatgcggcagaagatgga
tatccggtcccggatcccgatcgggtatatctcacacaggaagatttttttcaacgaata
cagcggtttcgcacggtgaccgtttctcccctcgagatacacgagccgggggcggtttct
ttcaggctcaatgcccaatccaatgacaatgtcagatccgaacttctccagtcaaaaggt
tatgacagcggaatggcaaagcttgtcaaacgcatggaatcctggcgagatgacggatat
gaactattcctggtcagccatacacaaggacaagctcaccggctcctgaaactgctggaa
ccgtacggtctcaatatcgattaccgcggaaccggatttgagcccgtcaatttcgatgca
gagcccactccgggaatacggctgtatgtcggcgcttgttcttccggattcaagctggat
caggctcaccggatcgtcctgtgtgaagaagagattttcggttccagagtcaggtcggtg
ccaaagaagcgggcccggggcacgctgatttcctcattgatggatctggctgaaggcgag
ccggtggtccatgaggattatggaataggaatttaccgtggcctcgtccgcaaagaattt
gacggagttgtaggcgaggtaatgctcatcgaatatgcagggggagatctcctgtatcat
ccggtcgagcgactgcaagtaattcagaagtatattgcaggttccgaagaacctccgcgc
atcgataagcttggcggtaaaggctgggtcaagataaaggccaggatcaagaagtccatt
aaggaaatggccggggagttgctcgaaatctatgccaaacgtcaagtgaccagaagatcc
gcttattctccgccggatgaaaatttcgccgcattcgaagcatcgttcgattttgaggaa
actccggatcaggcccgggcaattcaagatgtcatggaatccatggacacggacatgcct
atggaccggctggtgtgcggcgacgtagggtacggaaaaacagaagtggctctaagagca
gcttttcgggcaataatggatggcaggcaagttgctgttctcgtgcccacaacggtcctg
gctcaacaacatttcgatacgttcaagaaacgattcagaggatatcccttcattgtagac
gtgctttccaggtttcgttccaacgctgaacaaaaggaaacgctgcggcaagtcgaacag
ggcaaagtcgatctggttgtcggaacccaccgcttactgcagaaagacgttgttttcaaa
gatctggggctccttgtggtcgatgaagaacaacgtttcggcgtcgcgcataaggagcga
gtcaaaaaatacaaagcgcacgttgatgttcttacactcacagcgacccccataccccgt
actctcaatctttctcttacaggaatccgggatttatccgtcatcgagacccctccgacg
aatcgacagtccatcaggacatatgtgatgcgtcagtccgaagaagtggtcagagaagcg
ctcctcaaagagttgaacagaggcggccaggttttctatgtgcataaccgggtccagagc
atagcccgaaggactgccgcgctgcaaaagctcgttcctgagggaagattctgcatagct
cacgggcaaatggcggaacgggaactggaacaggtaatggtggactttcttacgggcaag
tacaatattctcgtctgtacgagcatcatagaatcgggattggacattcccactgcgaac
actatcgtcatcgagcgatccgataccttcggacttgcagatttgtatcaattgcggggc
cgtgtaggaagatcccacgtgcgcgcatacgcgtacctgcttacccctcctgaaaccatg
ataactcccgatgcggtaaaacgtttgtcagtaatgcaggaatattcgagtctcggtcag
ggattcagaattgccatgcgagacatggagattcgaggagcaggcaatattctgggtact
tcacaatccgggcatgtctctctcgtgggctacgagatgtacctggatcttctggaagac
gcgatacaggaactcaagggagaggaatccgcgcctagaatcgatccagaaatacacctg
aagatggaagtgtacatcccggacgattacgtgcctgacacgcaacagcgtatgaatctt
tataagagactttcaaaagcggaaaccaattcagagatagaggacacggaagaagaaatc
ttcgatctctacggcaagcctcccattcaggtgcaccatttgattcaagtcatgagaatt
cggctcgcgatgaaagaaattcgaatcctgagactcgattacaatggtcaagatctcgta
cttacgttcgatccggatactccgattcgcccggaaactctcgtgcaatgggcgcaggca
gatcatctcgtcaaaatcatgcccggagatcgcctgaagtaccgaatcgggaagaccaat
cccgacacgcgaatcaagaaatgccaagaattattcagccggctcgatcataaccgtcca
gagtctacggacggtgaaaaatccgataaggagcacttcagggcgaccgttcggatcaga
agaagatcatga
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