Desulfomonile tiedjei: Desti_4007
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Entry
Desti_4007 CDS
T02147
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dti
Desulfomonile tiedjei
Pathway
dti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desti_4007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dti03021
]
Desti_4007
03019 Messenger RNA biogenesis [BR:
dti03019
]
Desti_4007
Transcription machinery [BR:
dti03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Desti_4007
Messenger RNA biogenesis [BR:
dti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Desti_4007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
NACHT
AAA_22
Fungal_virus_P2_C
OB_RNB
AAA_25
AAA
AAA_14
S1CSD-TOTE-2
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AFM26647
UniProt:
I4CAQ6
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All DBs
Position
4671027..4672280
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AA seq
417 aa
AA seq
DB search
MDVAELKEKKVSELLSIANSLDVEGASSMRKQELIFAILQAHQQTEKEAPIRGEGVLETL
PDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNMRTGDTIAGYIRPPKDTERYFALLKVEA
INTEDPEKIRDKVLFDNLTPLYPNDRLKLETSPTNYSMRVMDLLTPIGKGQRGLIVSPPK
AGKTVLLQQIANSLTRNHPEVYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAQRHVQ
VADMVIEKAKRLVEHKRDVVILLDSITRLARAHNTVVPPSGKILSGGVDSNALHRPKRFF
GAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEIHLDRRLLERRIFPCIDIN
RSGTRKEELLLSQQDLQRIWLLRKLLADMNSVDAMEFLLDKIVQTDSNREFLEVMNK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggacgttgcagagttgaaagaaaaaaaggttagcgaacttctttctatagccaattcg
ctggatgtagaaggcgcaagcagtatgcgcaaacaggagctgatcttcgccatccttcag
gcccaccagcagaccgaaaaggaagctcctatcaggggtgaaggagtgctcgaaacgctg
cccgatggattcggtttcttgcgagcacctgattacaattatttgcccgggcctgatgac
atctatgtttcgcccagccagatacggcggttcaacatgagaaccggggacaccatcgcg
ggttatatccgtcctcccaaagatacggagcgttactttgccctgttgaaggtggaggcg
atcaataccgaggatcctgaaaagatcagggataaggtcctgttcgacaacctcaccccg
ctctatccgaacgacaggttgaaactggaaaccagccccacaaattactccatgagggtc
atggatcttctgactcccatcggcaaagggcagcgcgggctcatcgtttcgccaccgaag
gccggaaagaccgttttgctccagcaaatagccaacagcctgaccagaaatcatccggaa
gtctatctcatcgtgctgctcattgacgagcgtcctgaagaagtcaccgacatgcagcgg
tcggtccgaggagaggtcatctcctcaaccttcgacgaaccggctcaacgtcacgtgcaa
gttgccgatatggtcatagagaaggcaaaaaggcttgtagaacacaaacgggatgttgtc
attctcctggacagcatcacccgattggcgagggctcacaacaccgtggtccccccgagc
ggaaagattctctcgggtggtgtcgattcaaatgcgcttcacaggcccaaacgcttcttc
ggggcagcgagaaatatcgaagaaggcggaagtctgacgatcattgcaacggctctcatt
gacaccggcagtaaaatggacgaggttatttacgaggagttcaaaggcactggtaacatg
gaaatccaccttgaccggcgtctgttggaacgaagaattttcccgtgcatcgatatcaac
cggtccggaaccagaaaagaagaactcctgctaagccaacaggatctccagcgtatatgg
ttgctgagaaaattgctggcagatatgaattcagtggatgccatggaattcctcctggac
aaaatcgttcagaccgattccaaccgagagttccttgaagtcatgaataaataa
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