Desulfomonile tiedjei: Desti_4203
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Entry
Desti_4203 CDS
T02147
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dti
Desulfomonile tiedjei
Brite
KEGG Orthology (KO) [BR:
dti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dti03016
]
Desti_4203
Enzymes [BR:
dti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Desti_4203
Transfer RNA biogenesis [BR:
dti03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Desti_4203
Prokaryotic type
tRNA splicing ligases
Desti_4203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFM26840
UniProt:
I4CB99
LinkDB
All DBs
Position
complement(4889026..4890474)
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AA seq
482 aa
AA seq
DB search
MTQKPYKLVQIDEVRWEIPRTGKMRVPGLIYTDARTLPDIEKDESADQVYNVAQLPGIVG
RSLAMPDVHWGYGFPIGGVAAFDEHEGVVSPGGVGYDINCGVRIALTGLNKESLYPRIRP
LIDSFFAKVPSGVGSRGGIRLNKSELSKVLKAGAAWAVSQGMGEESDLDRIEAGGALQGA
DPSVVSDRAFERGKDQLGTLGSGNHFLEIGFIEKIFDEDTAAQWGIVQDQVTVMVHSGSR
GLGYQVCDDFLARMVKSVAAEGIELPDRQLACTRLHTPLAREYLGAMAAAANFAFANRQI
LMHLARTTWEKSLGISPRELQFRLLYDVCHNVAKFEMHTLNGQKRRVMVHRKGATRAFPK
NHPELSEVYRSTGQPVLIPGDMGRASYILAGQEGAMNETFGSACHGAGRILSRHEALRQT
KGRSIERELQDQNVYPRWVGRKTLREEFPHAYKDVSIVVDVVQRAGLARKVARIRPMGVV
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgacccagaaaccgtacaaattggtacaaatcgatgaggttcgatgggaaattccgaga
accggcaaaatgcgcgttcccgggcttatctacactgatgcgagaactttgcctgatatt
gaaaaagacgagagtgcggatcaagtgtacaacgtggcacaactacccggaatcgtaggt
cgatcccttgcaatgccggacgtacactgggggtacggctttcccatcgggggagttgct
gctttcgacgagcatgaaggtgtggtgtctcccggcggcgtgggttacgacatcaactgc
ggagttcgcatcgctttgaccggtttgaacaaggaatcgctctatcccaggattcgcccg
ctaattgacagtttctttgcaaaagtccccagcggggtggggtccaggggtggaatacgg
cttaacaagagcgaattgtcaaaagtgctcaaggcaggagccgcctgggctgtgagtcag
ggaatgggagaagagtctgacctggaccgcatcgaagcaggcggagcattacaaggggca
gacccgtcagttgtgagcgatcgggcattcgagcgtggaaaagatcagctcggaacactg
ggatccggaaatcattttctggagatcggattcattgagaaaatattcgatgaggacacg
gctgcacagtggggcattgttcaggatcaggtcacggttatggtccacagcggatcgcgc
ggcctcggatatcaagtatgcgacgattttctggctcgcatggtgaaatcggtggctgcc
gaaggtattgaacttccggacagacaactcgcctgtaccagattgcatactccgctcgca
cgggagtacctcggagcaatggctgctgctgccaactttgcttttgcgaatcgccaaatt
ctcatgcacctggccaggaccacctgggaaaagtctcttggcatatctcccagagaactg
caattccgtttgctgtacgacgtctgtcataacgtggcgaaattcgagatgcatactctc
aacggccagaagagacgagtcatggttcacagaaaaggtgctacacgagcatttcccaag
aaccatccggagctgtcggaagtttatcgaagtaccggtcaaccggtgctcattcccggt
gatatgggacgtgcgtcctacattctggcgggtcaagaaggcgccatgaacgagaccttc
ggctccgcatgtcatggagcgggtagaatactctcaaggcatgaagcgctccgacaaacg
aagggcaggtcgatagagagagaactccaggatcagaacgtgtacccccgttgggtagga
agaaaaacgcttcgggaagaatttccccatgcttataaggacgtatcgattgttgtggac
gttgtacaaagggcaggcctcgcgagaaaagtcgccagaatacggcccatgggagttgta
aagggataa
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integrated database retrieval system
