Desulfomonile tiedjei: Desti_4413
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Entry
Desti_4413 CDS
T02147
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
dti
Desulfomonile tiedjei
Pathway
dti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desti_4413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dti03400
]
Desti_4413
DNA repair and recombination proteins [BR:
dti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desti_4413
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Desti_4413
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
FtsK_SpoIIIE
Kinesin
AAA_22
DUF87
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AFM27045
UniProt:
I4CBV4
LinkDB
All DBs
Position
complement(5123334..5125385)
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AA seq
683 aa
AA seq
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MRPFQIYSDYVPKGDQPQAIDALATGVENGLKHQVLLGVTGSGKTYTMANVIERVQKPTL
VLAPNKTLAAQLFAEFKGLFPENAVEYFVSYYDYYQPEAYIPQSDTYIEKDSSINETIDK
MRHSATRSLLERQDVIIVASVSCIYGLGSPESYQNMLVHLIDKEDADRDSVLRKLVEIQY
ERNDIDFHRGTFRVRGDVVEVFPAYEESVALRIEFFGDTVESLYEIDPLRGKVIRSLEKV
AIYPASHYVTERSRLLSSVNAILEEMKERVEFFRDQNRFIEAQRIEERTKFDVEMLREMG
YCSGIENYSRYLTGRNAGEPPPTLLEYFPKDSLFMIDESHVSIPQLGGMFRGDRARKQNL
VDYGFRLPSALDNRPLQFEEFESHVNQAIYVSATPGPYELERSKDRVIEQIIRPTGLTDP
MIELRPASNQVDDLLGEIRKRIDQGHRVLVTTLTKKMAEDLTEYYAGLGIRVKYLHSEIH
TIERMEIIRDLRLGKFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTSGR
AARNVEGTVILYADHMTESIRKSTEETTRRRRLQQEYNVENDITPETVRKNITDILSSLA
EQDYVTVEVEKKPDLPDVAPDEIPGLIKQLTDRMFAAARDLEFEKAAELRDQIRALEQHQ
LTFGAAFGKQRPEKRQPRERILH
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgcggccgtttcagatatattccgattacgtacccaagggcgatcaacctcaagccata
gatgctttagcgactggtgtggagaacgggttgaagcatcaggttttgttgggtgtgact
ggctcggggaagacgtataccatggccaatgtcattgaaagagtgcaaaaacccacgctc
gtgcttgccccgaacaagacgctggctgctcaattattcgccgaattcaaaggattattc
cctgagaatgcggtagagtactttgtatcctattatgactattaccagccggaagcctat
ataccgcagtctgacacgtacattgaaaaagactcaagcatcaacgaaacgatagacaaa
atgagacattctgcgacaagatctcttctggaacggcaggatgtcataatcgtagcgtcg
gtttcgtgtatttatggtctcggatctccggaatcgtatcaaaacatgctcgtgcacctc
attgataaagaggacgccgatagggattcagtgttacggaagctcgtggaaatccagtac
gagaggaatgacatagacttccaccggggaacctttcgagtccgaggcgatgttgttgaa
gtatttcctgcttacgaagaatcggttgcgctccggatagaattctttggcgatacagtc
gagtcactctatgagattgacccactcaggggaaaagtgattcgctcgctcgaaaaggtt
gcgatttatccggcaagccattacgtgacggaaagatccagactgctttcgtctgtaaat
gccattcttgaggaaatgaaagagcgggtggagttctttcgcgaccagaatcgtttcata
gaggctcagcgcatagaggaaagaaccaaattcgatgtggagatgctcagggaaatgggc
tactgcagcggtatcgagaactattcccgatatctcaccggccgcaatgctggcgagcct
ccgcctacgctcctggaatattttcccaaagattccctgtttatgatcgatgaatcccat
gtcagcatacctcaattgggcggcatgttcagaggagatcgagccagaaaacagaacctg
gtcgattatggatttcggcttcccagtgcgctggataatcggccgttgcagtttgaagag
tttgaatctcacgtgaatcaagccatttacgtctcggcaactcccggcccatatgaactg
gagaggagcaaagaccgggtaatagagcagatcattcgtcccaccggcctgaccgacccg
atgattgaactgcggcccgcttccaatcaggtggacgatcttttaggtgaaatccgcaaa
cgtatcgatcagggtcatagagtgctggtcaccacgctcacaaagaagatggcggaagac
cttaccgaatactatgcaggcctgggaattcgggtgaagtacctgcattctgaaatccac
accatagaacgcatggaaatcattcgcgatctgcgcttggggaaattcgacgtgctggtg
ggaatcaatcttctgcgagaaggtctggatattcctgaagtggctctcgttgctattctg
gatgcagacaaggaagggttcttgcggtcggagcgttcgctgatccagacttccggtagg
gctgctcgtaatgtggaaggcacggtgattctgtatgcagaccacatgactgaatccatc
cgcaagtctacggaggagaccacgcgaagacggcgtctccagcaggaatacaatgtcgaa
aacgacataacgccggaaacggttcgtaagaacatcaccgacatcctctcttctctcgcg
gaacaggattacgtcacggtggaagttgagaagaaacccgatctacccgacgtggctccg
gacgagattcccggtctgatcaaacaactgacggatcggatgttcgctgcagctcgggac
ctggagtttgagaaggctgccgaattacgggatcagattcgtgcgctggaacagcatcag
ctcacttttggagcagcattcggaaagcagcgtcctgagaagcgtcagccgcgggaaaga
attttgcattga
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