Deefgea tanakiae: K4H28_05190
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Entry
K4H28_05190 CDS
T08586
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dtk
Deefgea tanakiae
Pathway
dtk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dtk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K4H28_05190 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtk03400
]
K4H28_05190 (recD)
Enzymes [BR:
dtk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K4H28_05190 (recD)
DNA repair and recombination proteins [BR:
dtk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K4H28_05190 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
Helicase_RecD
UvrD-helicase
AAA_22
T2SSE
SLFN-g3_helicase
CbiA
DEAD
TrwB_AAD_bind
Flavi_DEAD
nSTAND3
AAA_28
UvrD_C
AAA_7
RsgA_GTPase
DO-GTPase1
NPHP3_N
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QZA78804
LinkDB
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Position
1094422..1096191
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AA seq
589 aa
AA seq
DB search
MNEVVEKNAPVLDFSSALVQLLRRQNPAAPAELFGLAAELAKASERGDVCVEIPAQTDIA
AWLASGLVGEAGCFAPLIVSQQRLYLARYHQYESRLAEQLLALAVDAVEPPDERVLRSQL
QSLFANSKENPDWQKVAVAAALHQRLTVISGGPGTGKTTTLVKLLSLLQMTSKTTLQIGL
AAPTGKAAMRMQEAIRKGKADLIAQGVLPDDIAVKIPDVAVTLHRLLGSRFNSVQFRHSA
AQPLVLDVLVLDEASMIDLALMSKVVDALPPQGRLILLGDKDQLSSVEAGAVMGDLCAGA
GLSPQFAEQLSNLTGQRIEAGFSESRIGDHVMTLQKSYRFSGVIGDLARAINRGDLRNLS
ELLAASSQSENSALTWYGTNPAQYDLMGPIMAGFDDFFAAVSRKACPNEVFKAFEAFRVL
SPIRNGAASVTRVNAAIETQLLKRGLRSSDQVWYAGRPVLVPQNLYDLELYNGDIGLTLP
DESGKLWVHFPTADGGTRSIAPARLPAVETAFAMTVHKSQGSEFGHVLLLLPSPAEGGSG
LLSRELVYTAITRARSKVSLWGEETVIASASRKGVVRQSGLAARLQVGG
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagtcgtagaaaagaatgcgcctgtgctcgatttttctagtgctttggttcaa
ctactgcgcaggcaaaatccggctgcccctgctgagttattcggtttggcggcggagttg
gcaaaggcgagtgaacgtggtgacgtctgtgtcgagattcctgcgcaaaccgatattgcg
gcgtggttggccagtggcttggtcggcgaggcgggttgttttgcacccttgattgtgtcg
cagcaacggctctatttggcgcgttatcatcagtatgaatctcgcttggctgagcaactg
ttggctttggcggtcgacgcggttgagccgcctgatgagcgggtgttgaggtcgcagttg
cagtccttgtttgctaatagtaaggagaatcccgattggcagaaggtggcggtggcagcc
gctttgcatcagcggctgacggtgattagtggcggccctggtaccggaaaaacgacgact
ttggtcaaattactgtccttgctgcaaatgacatcgaagacgaccttacaaattggcttg
gctgcgccaactggcaaggcggcgatgcggatgcaagaagcgatacgcaaaggcaaggcc
gatctcatcgcgcaaggtgtattgcccgatgacatcgccgtaaaaattcccgatgtggcg
gtgaccttgcatcgcttgctgggcagtcggtttaactcagtgcagtttcgccattccgca
gcgcaacctttggtgcttgatgtgctggtgttggacgaggcctcgatgattgatttggcg
ctgatgagtaaagtggttgatgccttaccaccgcaggggcgattgattttgttgggtgat
aaagatcaattgtcgtcggttgaggcgggcgccgtgatgggcgatttgtgcgctggagct
ggtttatccccacaatttgccgagcagctatccaatttaacggggcagcggattgaggca
ggattttctgagtctcgcatcggcgatcatgtgatgactttgcaaaaaagctatcgtttt
tctggggtgattggtgatttggcgcgcgcgattaatcggggtgatttacgtaacttgagt
gagttgctggccgcaagcagtcaatccgaaaactcggctttgacttggtatggtactaat
ccagcgcaatacgatttgatgggcccgattatggctggctttgatgacttttttgctgcg
gtgagtcgtaaagcctgcccaaacgaagtgtttaaagcatttgaggcctttcgggtgttg
agtccgattcgcaatggtgctgctagcgtgactagggtcaatgcggccatcgaaacccaa
ttgctcaagcgcggtttgcgtagtagtgatcaagtctggtatgccggtcgccctgtgttg
gtgccacaaaatctgtacgatttagagctttacaacggcgatattggcctgactttacct
gatgagagtggcaagctttgggtgcattttccaaccgcagatggcggaacacgctcaatc
gcgcctgcgcgcttaccggcggtagaaacggcgtttgcgatgacggtgcataaatcacaa
ggctctgagttcggtcatgtgctgttgttgcttccgagtcccgctgagggtggaagtggc
ttattgagtcgagagctggtttacaccgccatcacgcgcgccagaagcaaagtgagttta
tggggtgaggagacggttatcgccagtgctagccgcaaaggagtggtgcggcagtctggc
ttggcggcacgtctacaggtgggtggttag
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