Deefgea tanakiae: K4H28_09270
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Entry
K4H28_09270 CDS
T08586
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dtk
Deefgea tanakiae
Brite
KEGG Orthology (KO) [BR:
dtk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtk03019
]
K4H28_09270 (hrpA)
Enzymes [BR:
dtk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K4H28_09270 (hrpA)
Messenger RNA biogenesis [BR:
dtk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K4H28_09270 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_23
T2SSE
Phage_TAC_17
nSTAND3
AAA_25
NACHT
SLFN-g3_helicase
FtsK_SpoIIIE
NTPase_1
AAA_30
ResIII
SRP54
PhoH
Motif
Other DBs
NCBI-ProteinID:
QZA76526
LinkDB
All DBs
Position
1969098..1973033
Genome browser
AA seq
1311 aa
AA seq
DB search
MNLDFRALRAQLADCQSNDYHSLSRLLQQCNERQKKQQDFAQQHADLLAGIAKSQAKTAL
RREKLPIPDYDDSLPVNQRRDELKAAIAKHQVVIVCGETGSGKTTQLPKICLELGRGVHG
LIGHTQPRRLAARSVASRIAQELKSETGAIVGYKVRFTDKSSPSSYIKLMTDGILLAETL
SDRYLNQYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIVTSATIDSDRFSKHFNN
APVMEVSGRTFPVEVRYKELASKDEDDQEIEMEEAIAQAVDELWRKDGSGDVLVFLPGER
EIRETAEELRKAKLRDAEILPLFARLSNEDQQRIFRPSSTGRRIVLATNVAETSLTVPGI
RYVIDSGQARINRYSPRAKVEQLLIEKISQASARQRAGRCGRVASGICVRLYSEQDFLLR
SEFTDPEITRSSLAGVILRMAALKLGNVVDFPFLEAPSSKLISDGYQQLRELGAVNDSDT
LTDIGRQLARLPVDPRVGRMLIAGRDEGCLKEMLIITSGLSLQDPRERPYEARAAADQAH
AKFNEEKSDFLSYLRLWEFFEKLLADKTTNRQLVQDCHRSFLSYLRLREWRELHKQLSDM
VISEEASDARHRHAPFRLNEKPATFEQIHKALITGLLGNLGFKQPENDEYLGARGIKFNV
FPGSSLKKTRPKWIVAAELVETSKLYARCVAAIEPEWIEKLAPHLIKKQYFDPHWSKDNA
QVNASLRITLYGLPIVARRTIHFGSINPAEAREMFIREALVRFNYNSKAKFFDHNFAMLL
DVEELEHKTRRQDVLVDENALFAFFDAIIPQDIVNGAGFEAWRKGAEKLNPQLLYLQKDD
LMQHSAAAVTEEQYPEFIRVHDIKLPLSYRFEPGHVLDGVTMTLPLHLLNRVNHATFDWL
VPGLIREKITLLIKSLPKSTRRLCVPVPEFATKMLTALETASRDEPLLPQLAQATTRGVG
QPVSADEFSQTDLPLHLRMNFRVVDDAGQELAQGRDLIAIRAQLGEAAQLTFRDTADETT
GIEKSGITKWDFGDLPAKLNFKRHGKAMTGYPGLVPDEDEAGKECVAIRLFDTEHAANEA
HRAGVVRLLQFELKEHLKQLPKALPNFNQLAIHYRSLGNSDELMADVIACICNRAFLGDD
EAPRKKKDFDDQKSRAKVRLPSVRDAVLRTLNDIAPDFVALGTLTAKGGNIQNELKTQLS
ELIYKGFLTATPWEQLPRVPVYIKAMKVRLEKRAQNPNRDGQRGAEVAELMQRYLAEIDK
WQREGRDTSTLLPFRWMIEELRVGLFAQELRTPYPVSVKRLDKIWGEITKR
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggactttcgcgccctgcgcgcacaactcgctgactgccaatccaacgactat
cactcgctctctcgtcttttgcagcaatgcaacgagcggcaaaaaaagcagcaagacttt
gcacagcaacacgccgacttgctcgcaggcatcgccaaatcgcaagccaaaaccgcattg
cgccgcgaaaagctcccgattcccgactacgacgacagcctacccgtcaatcaacgacgc
gatgagctgaaagccgcaattgccaagcaccaagttgtcatcgtctgcggtgaaaccggc
tcaggtaaaaccacgcagctgcccaaaatttgtttagaacttggtcgtggtgtgcatggc
ttgattggtcacacgcaaccacgccgtttggctgcgcgctcagtcgctagccgcatcgca
caagagctcaaatccgaaaccggcgccattgtcggctataaagtccgctttaccgacaaa
agctcaccatcgagctacatcaagttgatgaccgacgggattttgcttgccgaaacgcta
tctgatcgctatttaaatcaatacgacaccatcattatcgacgaggcgcacgagcgcagc
ttgaacatcgactttttgctcggttacttgaagcaactcttaccgcgtcgccctgatctc
aaagtcatcgtcacctcggcaacgattgattccgaccgtttcagcaagcatttcaataat
gcgccggtaatggaagtctctggccgcaccttcccagttgaagtgcgttacaaagagctc
gccagcaaagacgaagacgaccaagaaatcgagatggaagaagccatcgcgcaagcggtc
gatgagttatggcgtaaagatggcagcggcgatgtgctggtgtttttaccgggcgagcgc
gagattcgcgaaaccgccgaagaactacgcaaagccaaactgcgcgacgctgaaatcctg
ccgctgttcgcccgattatccaatgaagatcagcagcgcattttccgcccgagcagcaca
gggcgacgtatcgtgctggcgaccaatgtagccgagacttcgctaacggtacccggcatt
cgttatgtaatcgacagcggccaagcaaggattaaccgctacagcccgcgcgcgaaagtc
gagcaactcttgatcgaaaaaatctcgcaagcctcggcgcgccaacgtgctggtcgttgc
ggccgtgtcgccagcgggatttgcgttcgcctgtattcagaacaagattttttgcttcgc
tctgaatttaccgatccagaaatcacccgctctagtttagcgggcgtcattttgcgtatg
gccgcactcaaactcggcaatgtggttgattttccatttttggaagccccatccagcaaa
ttgatttccgatgggtatcagcagctacgcgaattgggtgctgtcaatgatagtgatacc
ctcaccgatattggtcgacaactcgcccgccttcccgttgacccacgcgttggccggatg
ttgattgcggggcgtgatgaaggctgtttgaaggaaatgttgattattacctcagggctc
tcactccaagacccacgcgaacgcccgtatgaagcgcgcgcggcggccgatcaagcgcac
gccaagttcaatgaagaaaaatcagatttcctctcttatttgcggctgtgggaattcttt
gaaaaactgttggccgataaaacgaccaatcgccaattggtgcaagattgccatcgttcg
ttcttgtcctatttgcgtttgcgcgaatggcgcgaattgcataaacagctttccgatatg
gtcatcagtgaagaggcaagcgacgcgcggcaccgccatgcgcccttccgcttgaacgaa
aagccggctacgtttgagcaaattcataaagccttgattacgggcctattgggtaattta
ggtttcaaacagccagaaaacgacgaatacctcggtgcgcgcggcattaaatttaatgtg
tttcctggctctagcctgaaaaaaacgcggccaaaatggatagtcgcggcggaactagta
gaaaccagcaagctctacgcgcgctgcgtcgctgcgattgaacccgaatggatagaaaaa
ctcgcgccgcatctgatcaagaaacaatactttgatccgcattggagcaaagacaatgcg
caagtcaatgcatcgctccgtattacgctgtatggcttgccgattgtagcgcgcaggacg
atacacttcgggagtatcaaccctgccgaggcccgcgagatgtttatccgcgaagctttg
gtgcgctttaactacaacagcaaagccaagtttttcgaccacaactttgcgatgctgctc
gatgtggaagaactagagcacaaaacgcgccgccaagacgtcttggtcgatgaaaacgcc
ctcttcgcttttttcgatgcgatcattccgcaagacatcgtcaatggcgctggctttgaa
gcttggcgcaaaggcgcagaaaaactcaatccgcaactgctctacctgcaaaaagacgac
ctgatgcagcacagcgcagcggcggtcaccgaagagcaatacccagaattcatccgcgtg
cacgacatcaaactgccgctatcgtatcgctttgaacccggccacgtgctcgatggcgtg
acgatgacgctgccgctgcatttgctcaatcgcgtcaatcacgcgacgtttgattggctg
gtgcccggcttaatccgtgaaaaaatcacgctactgattaaatcgctgcccaaatcgact
cgtcgcctctgtgtaccggtgcccgaatttgcgaccaaaatgctcaccgcgctggaaacc
gctagccgtgacgaaccactgctaccgcaactggcgcaagcgaccacgcgcggcgttggc
cagcccgtcagcgctgatgaattcagtcaaactgatttaccactgcatttacggatgaat
ttccgcgtcgtcgatgacgcaggccaagagctcgcccaaggccgcgatttgattgcgatt
cgcgctcagctcggcgaggcggcgcaactcaccttccgcgataccgcggatgaaaccacg
ggcatcgagaaatcgggcattacaaaatgggattttggcgatctacccgccaaactcaat
ttcaaacgtcatggcaaagcgatgacgggctaccccggccttgtacccgacgaagacgaa
gcgggtaaagaatgcgtcgcgattcgtctgtttgataccgaacacgccgcgaatgaagcg
caccgtgctggcgtcgtccgcctgctgcaatttgaactcaaagagcatctgaagcaatta
ccgaaggcgctgccgaactttaaccagctcgcgattcattatcgttcgctcggcaatagc
gacgagctaatggcggacgtcatcgcctgcatctgcaaccgcgcctttttgggcgacgac
gaagcgccgcgcaaaaagaaagactttgacgaccaaaaaagccgcgccaaagtacgccta
ccgtcagtgcgcgacgccgtgctacgcacgctcaacgacatcgcacccgattttgtcgca
ctcggcacgctgaccgccaaaggcggaaatatccaaaacgagctaaaaacccagctcagc
gagctgatctacaaaggctttctcaccgccacgccatgggagcaattaccgcgcgttccc
gtttacatcaaagcgatgaaagtccgcctagaaaaacgcgcccaaaacccaaaccgcgac
ggccaacgcggcgcagaagtggctgaattgatgcagaggtatctggctgaaatcgataaa
tggcaaagagaaggaagagatacttcgaccctattgccattcagatggatgattgaggaa
ttacgcgttggcttgtttgcgcaggagttgcggacaccgtatccggtatcagtaaagcgg
ttggataagatttggggtgagattacgaagcggtga
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