Deefgea tanakiae: K4H28_12455
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Entry
K4H28_12455 CDS
T08586
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dtk
Deefgea tanakiae
Pathway
dtk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dtk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K4H28_12455 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtk03021
]
K4H28_12455 (rpoC)
03400 DNA repair and recombination proteins [BR:
dtk03400
]
K4H28_12455 (rpoC)
Enzymes [BR:
dtk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K4H28_12455 (rpoC)
Transcription machinery [BR:
dtk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K4H28_12455 (rpoC)
DNA repair and recombination proteins [BR:
dtk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K4H28_12455 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QZA77099
LinkDB
All DBs
Position
complement(2671320..2675540)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKGLLELFKQVAQDEEFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIDLASPVAHIWFLKSL
PSRLGMVLDIALRDIERVLYFEAFIVVEPGMTPLTRGQLLTEEDYFAKVEEYGDEFVALM
GAEAVRELLKSMDVDQEISNLRAELDSTGSETKIKKIAKRLKVLEAFDRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKLMALELFKPFIFHKLEVMGLATTIKAAKKMVESQEPVVWDILEDVIREHP
ILLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLAPANGEPIIVPSQDIVLGLYYMTREAKYAKGERLNDDGQRLTIFANVSE
ALRAYQSKEVTLQTRVAIRLKEWFKNESGDWESKMVRRDTTVGRAILSEILPKGLAFSHI
DKSLKKKEIGKLINASFRRCGLKETVIFADQLMYTGFAYSTRGGISICVDDMLVPANKVP
LLAAAQAEVKEIEQQYSSGLVTNGERYNKVVDIWGRAGDQIAKAMMDQLAKETVYDANGK
KDEQESFNSIYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLTVLQY
FISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTKNGVAMKAVMQGGDVV
EALRDRILGRIVVKDVVDPSTQETIFEVGYLLDEDSVDEIEARNIDEVIVRTPLSCETRY
GLCAKCYGRDLGRGQIVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEA
KSNGRIAFSANMRYVTNAKNELVVIARSAELLILDDVGRERETHKIPYGATLTVKADDTV
KAGAVLGTWDPHTRPIITEYSGTVRFENVEEGMTVVKQVDEVTGLSTLVVIASKAKVTAS
KAVRPLVKLLDENGLEMKLAGTDTAVTISFQVGSIITVKDGQKVGVGDVLARIPQESAKT
RDITGGLPRVAELFEARSPKDAGMLAEITGTASFGKDTKGKQRLVLTDLEGTPHEYLISK
DKHVMVHDGQVVSQGEVIVDGPIDPHDILRLQGIEALARYIVQEVQEVYRLQGVKINDKH
IEVIVRQMLRRVVISDAGDSGFILGEQVERAEVLIANDKLAEEGKEIAKFDNILLGITKA
SLSTDSFISAASFQETTRVLTEAAIMGKVDDLRGLKENVIVGRLIPAGTGLAYHKNRKRL
LAKNEVLAPFAEAAAEVIAEIGDISE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcttactcgaacttttcaagcaagtcgcgcaggacgaagaatttgacgcgatt
aaaattggcctagcatcgccagaaaaaatccgttcttggtctttcggcgaagtgaaaaag
ccagaaaccattaactaccgtacgttcaaacctgagcgtgatggtttgttttgtgctcgt
attttcgggccgattaaagattacgaatgcttgtgtggtaaatacaagcgtttgaaacac
cgtggtgtgatttgcgagaagtgcggcgttgaagtgacgttgtctaaagtacgtcgtgag
cgtatgggtcacattgaccttgcttcacccgttgctcatatttggttcttgaaatcacta
ccaagtcgtttgggtatggttttggatatcgctttgcgtgatatcgaacgcgttttgtac
tttgaagcattcatcgttgttgagccaggtatgacgccgctaacgcgtggtcagttgctc
accgaagaagattacttcgcaaaagttgaagaatacggcgatgagttcgtggccttgatg
ggcgccgaagcagtgcgtgaattgctcaagtcaatggatgttgaccaagagattagcaat
ctgcgtgccgaactcgatagcactggttcagaaacaaaaatcaagaaaatcgctaagcgc
ttgaaagtgcttgaagcgtttgatcgctcgggcattaagccagagtggatgattatggaa
gtgttgccggtattacctccggaactacgtccattagttccattggatggcggccgtttt
gcgacttctgacttgaacgatttatatcgtcgcgttatcaaccgtaataaccgtttgaag
cgcctgcttgaattgcgcgctccggaaattatcgtacgcaacgaaaaacgcatgttgcaa
gaggcagtggattcattgctcgacaacggtcgtcgcggtaaagcgatgactggcgcgaac
aaacgtccattgaaatcacttgccgatatgattaaaggtaagggcggtcgtttccgtcag
aacttgttgggtaaacgtgtcgattactcaggtcgttctgttattaccgttggtcctact
ttgcgtttgcatcaatgtggcctgccaaaattgatggcactcgaattgtttaaaccattc
atcttccataaattggaagtgatgggcttggcaacaacgatcaaagcagcgaagaaaatg
gttgaaagccaagagcctgtggtttgggatatcttggaagacgtcattcgtgaacatcca
attttattgaaccgtgcaccaacattgcatcgcttgggtattcaagcctttgagccgatg
ctgattgaaggtaaagcgattcaattgcacccactcgtctgcgcggcattcaatgctgac
tttgacggtgaccaaatggcggttcacgttccattgtcgctagaagcgcaaatggaagca
cgtacattgatgctcgcttcaaacaacgtattggcccctgcgaatggcgagccaatcatt
gttccgtcgcaagatatcgtcttgggtctgtactacatgactcgcgaagcgaaatatgcg
aagggtgagcgtctgaatgatgacggtcaacgccttacaatttttgcaaacgtttcagag
gcgcttcgtgcttaccaaagcaaagaagtaacattgcaaacgcgcgtagcgattcgcttg
aaagaatggttcaaaaacgaatcaggcgattgggaaagcaagatggtacgccgcgacaca
actgtcggccgtgccatcttgtctgaaatcttgcctaaaggtttggcgttctctcatatc
gacaaatctttgaagaaaaaagagatcggtaaattgatcaacgcttctttccgtcgttgc
ggcttgaaagaaacggttatttttgctgaccaattgatgtacaccggttttgcatactca
acacgtggtggtatctcgatttgtgttgatgacatgttggtgcctgctaataaagttcca
ttgttggctgcagctcaagctgaagtgaaagagatcgagcagcagtacagctctggtctg
gtaacgaacggcgaacgctacaacaaggtagtcgatatctggggccgtgctggtgaccaa
attgcgaaagcgatgatggaccagttggcaaaagaaacggtctacgatgcaaacggtaag
aaagacgaacaagagtcgttcaactcgatttacatgatggctgactcaggcgctcgtggt
tcacctgcacagattcgtcagttggctggtatgcgtggtttgatggcgaaacctgacggt
tcgattattgaaacgccgattacgaccaacttccgtgaaggtttgacggttctgcagtac
tttatttcaacgcacggtgcacgtaaaggtctggcggatacggcattgaagacagcgaac
tcgggttacctgactcgtcgtctggtcgatgtaacgcaagatttggttgtaactgaagat
gattgcggtactaagaacggcgtagcaatgaaagccgttatgcagggtggtgatgttgtt
gaagccttgcgtgatcgtattctgggtcgtattgtcgttaaagatgtggttgatccttca
acgcaagaaacgatctttgaagtgggctacttgcttgacgaagattcggttgatgagatc
gaagcacgcaatatcgatgaagtgattgttcgtactccgttgtcgtgcgaaacgcgttat
ggtctatgcgctaagtgttatggccgtgacttgggtcgtggtcagatcgttaatgccggt
gaagctgtcggtgttattgcggcacaatcaattggtgagcctggtacacagttgacgatg
cgtacgttccacattggtggtgcggcatctcgagctgctgctgctagccaagttgaagcg
aaatcgaacggtcgtatcgcgtttagtgcgaatatgcgttatgtaactaacgcgaaaaac
gaacttgtggttatcgcacgttcagctgaattactgattttggatgatgtgggtcgtgaa
cgcgaaacacataagattccttacggtgcaacattgactgtaaaagctgatgacactgtg
aaagctggtgcagttctcggtacttgggatccacatactcgaccaatcatcacggagtac
tcaggtactgttcgttttgaaaatgttgaagagggcatgacggtagttaaacaagtcgat
gaagtgactggtttgtctactttggttgttattgcatcaaaagctaaagttacagcttct
aaagcggttcgtcctttagttaaattgttggacgaaaacggtttggaaatgaagttggct
ggtactgatactgccgttacgatttcattccaagttggttcgatcattacagttaaagat
ggtcaaaaagtgggtgtgggtgatgtgctggctcgtattccacaagaatcagctaaaact
cgtgatattaccggtggtctgccgcgtgtagctgagttgtttgaagctcgttcaccgaaa
gatgcgggtatgttggctgagatcacgggtactgcaagttttggtaaagataccaaaggt
aagcagcgtctggtcttgactgatctagaaggtacgccacacgaatacctgatttctaaa
gacaagcatgtgatggtgcatgatggtcaagtggtaagtcagggtgaagtgattgttgac
ggcccgattgatccgcatgatattttgcgcttgcaaggtattgaagcgttggctcgttac
atcgttcaggaagtgcaagaggtttaccgcttgcaaggcgtgaagatcaatgacaagcat
atcgaagtgattgttcgtcagatgctacgccgtgtagtaatttcagatgcgggtgattct
ggatttatcttgggtgagcaagtagagcgagctgaagttctgattgcgaatgacaagctt
gcagaagaaggtaaagaaatcgcgaagtttgacaatattcttttaggtattactaaagct
tcattgtcgactgattcctttatctctgcggcatcgttccaagagacaacacgtgttctg
actgaagctgccattatgggtaaagtcgatgatcttcgtggtttgaaagaaaacgtgatt
gtaggtcgtttgattcctgcaggtactggtcttgcatatcacaagaaccgtaaacgttta
ttggcaaagaatgaagttttagcaccgtttgctgaagctgccgctgaagttattgctgaa
attggcgatatttctgaataa
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integrated database retrieval system
