Deefgea tanakiae: K4H28_12460
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Entry
K4H28_12460 CDS
T08586
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dtk
Deefgea tanakiae
Pathway
dtk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dtk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K4H28_12460 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtk03021
]
K4H28_12460 (rpoB)
03400 DNA repair and recombination proteins [BR:
dtk03400
]
K4H28_12460 (rpoB)
Enzymes [BR:
dtk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K4H28_12460 (rpoB)
Transcription machinery [BR:
dtk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K4H28_12460 (rpoB)
DNA repair and recombination proteins [BR:
dtk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K4H28_12460 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DUF2515
Motif
Other DBs
NCBI-ProteinID:
QZA79535
UniProt:
A0ABX8ZCN0
LinkDB
All DBs
Position
complement(2675626..2679798)
Genome browser
AA seq
1390 aa
AA seq
DB search
MKYSFTEKKRIRKSFAKRASVLEVPFLLATQIDSYSEYLQLGVSVEDRREIGLQAAFNSI
FPIVSHNEYARLEFVHYTLGVPAFDVKECQQRGITFAAPLRARVRLVIMDRESSKPTVKE
VKEQDVYFGEIPLMTRSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDLLFFRIDRRRKMPVSILLKALGYTAEQILAQFFDTDTFYLTDDG
IYWELVPDRLRGEVAKFDIIADDGKVLAQKDKRITAKTIRDINNAGMTRIPVPLDYMYGR
MLSTAVISPETGELVAKANDEITEDLLVKLDSAEVREIKTLYINDLDQGGFISATLRTDE
TLDEWQARVAIYRMMRPGEPPTEDAVQALFKGLFFNEDRYDLSAVGRMKFNSRAYPDRLE
EKAPDWQRRFYEQAGKKGITGPGILSTEDIVAVIGILLELRNSRGEVDDIDHLGNRRVRS
VGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPVSAAVKEFFGSSQLSQFM
DQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL
SCYARTNEYGFLETPYRKVINGQATLEIEYLSAIQEGKYVIAQANAGLDDDSKLTDELVT
CREAGETIVATPDRVQYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRA
EAPMVGTGIERTCATDSGTAVTALRGGVVDFVDATRIVVRVNDSETVAGETGVDIYNLVK
FTRSNQNTNTNQRPIVVKGDRIEKGDVVADGASTDLGELALGQNMTIAFMPWNGYNFEDS
ILISEKVIADDRYTSIHIEELNVMARDTKLGPEEITRDISNLSERMLGRLDEAGVVYIGA
EVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFT
REGIERDKRAQAIIDEQLRRYRQDLNDQLRIVNDDLFERIERMIVGKVANGGPKRLAKGT
EITSEYLADQVSKHDWFDIRLADEEGARQLEAMKDLIAQMKQEFELRFEDKKRKLTQGDE
LPPGVIKMVKVYVAVKRRLQPGDKMAGRHGNKGVVSKILPVEDLPHMADGTTVDIVLNPL
GVPSRMNIGQILEVHLGWAAKGIGQRIDAMLREQRNVAEVRETLNKIYKSKGKAEDISEL
SDAEIMNLAQGLRTGMTFASPVFDGADESEIQEMLQLAYPDEDPRTQQLDFNSSKTQMQL
FDGRTGEPFERKVTVGVMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKVYENIVKGDHRIDAGMPESFNVLVKEIRS
LGIDIDLETY
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgaaatactcgttcactgagaaaaaacgcattcgcaagagttttgcgaagcgggcgagt
gtcctcgaggtgccattcctattggcgactcagattgactcttattccgaatacttgcaa
cttggcgtatctgttgaagatcgtcgcgaaattggtttgcaagctgcgtttaattcaatt
ttccctatcgtttcccataacgaatatgcacgcttagaatttgtgcattacaccttgggc
gtgccagcattcgatgttaaagaatgtcagcagcgcggtattacatttgccgctccgttg
cgtgcgcgtgttcgtttggtcattatggaccgcgagtcatcgaagccaacggtcaaggaa
gtgaaagagcaggatgtttacttcggtgaaatcccactcatgacacgcagtggttcgttt
gttatcaacggtaccgaacgtgtaattgtttctcagttgcatcgctctcctggcgtgttc
tttgagcatgacaagggtaaaacacacagctcaggcaaattattgttctcagcacgtgtg
atcccttaccgtggttcatggctcgatttcgagtttgacccgaaagatttgttgttcttc
cgtattgaccgtcgccgtaaaatgccggtttctatcttgcttaaagcattggggtatacg
gctgaacagattctggctcaattctttgatacagataccttctacctcactgatgatggc
atttattgggaactggttcctgatcgtctgcgcggtgaagtggcgaagtttgacatcatc
gctgatgatggcaaagtactcgcacaaaaagacaagcggattaccgcaaaaaccattcgt
gatatcaacaatgcaggcatgacgcgtattccagttccgctggattacatgtatggccgc
atgttgtcgactgccgtgattagcccagaaacaggcgagttggtggcgaaagcgaatgat
gaaattactgaagatctattggttaaactcgatagcgcagaagtaagagaaattaaaaca
ctctacatcaatgatctcgaccaaggtggcttcatctctgcaaccttgcgtacagatgag
acattggatgagtggcaagctcgcgtggcgatttatcgcatgatgcgtcctggtgagcca
ccaactgaagatgcagttcaggctttgttcaaaggcttgttcttcaatgaagatcgctac
gatctttctgctgttggtcgtatgaaatttaacagccgtgcttaccctgatcgcttggaa
gaaaaagcaccagattggcaacgtcgtttctacgagcaagcaggcaaaaaaggtattact
ggcccaggtatcttgtcgacagaagacatcgttgcggtcattggtatcttgcttgagttg
cgtaacagccgtggtgaagtcgatgatatcgatcacttgggtaaccgtcgtgttcgttca
gtcggcgagttggctgaaaaccaattccgcgctggcttggttcgtgttgagcgcgctgta
aaagaacgtttgtcacaagcagaatcagataacttgatgccacatgacttgatcaatgcc
aagccagtttcggccgcagtgaaagagttcttcggttcgtcgcagttgtcgcagtttatg
gaccaaacgaatccattatctgaaattacccacaagcgccgtgtatcggcacttggacca
ggtggtttgacgcgagagcgcgcaggctttgaagttcgtgacgtacatccaacgcattac
ggccgtgtttgtccgattgaaacaccggaaggtccaaacattggtttgatcaattcattg
tcttgctacgcacgtactaatgaatatggtttcttggaaacgccataccgcaaagtaatc
aatggtcaagcgacgcttgaaattgaatacttgtcggcgatccaagaaggtaaatacgtt
attgctcaggcgaatgccggtttagatgacgatagcaaattgaccgatgagttggtgact
tgccgtgaagcaggtgaaaccattgttgcaacgccagatcgcgtgcaatacatggacgtt
gcaccaagccagatcgtttctgttgcagcttcattgattccattcttggaacacgatgac
gccaaccgtgcattgatgggcgccaacatgcaacgtcaagcggttccttgcttgcgtgct
gaagcgccaatggtgggtacaggtatcgagcgcacatgtgcgactgactcgggtactgcc
gtaactgccttgcgtggcggtgtggttgattttgttgatgcaacccgtatcgtggttcgt
gttaacgatagcgaaactgtggctggtgagaccggtgtagatatctacaacttggttaaa
tttacccgctcgaatcaaaataccaataccaatcaacgtccgatcgtcgtcaaaggtgat
cgtatcgagaaaggtgatgtggtagctgacggcgcttcaactgatctgggtgagttggcc
ttgggtcaaaatatgaccatcgccttcatgccttggaacggttacaacttcgaagattca
attttgatctccgaaaaagtgattgcggatgaccgttatacttcgatccatatcgaagag
ttgaacgtaatggctcgcgatacgaagttgggccctgaagaaattacccgcgatatttca
aacttgtctgagcgtatgctgggtcgtttggatgaagcgggtgtggtttacattggtgct
gaagttgaagctggcgatgtattggttggtaaagtaacgccaaaaggcgaaactcaactg
actccagaagaaaaactactgcgtgcaatcttcggtgaaaaagcatctgacgttaaagat
acgagcttgcgtgtgccttctggcatggtaggtaccgtgattgacgtgcaagtgtttaca
cgtgaaggcatcgaacgcgataaacgcgctcaagccattatcgacgagcagttgcgtcgc
tatcgccaagatttgaatgaccaacttcgtattgttaacgatgacttgttcgagcgtatt
gaacggatgatcgtgggcaaggttgctaatggtggtcctaagcgtctggcgaaaggcaca
gaaattacttctgagtacttggcagaccaagtatcgaagcatgactggttcgatattcgc
cttgcggatgaagaaggcgcgcgtcaactggaagcgatgaaagacttgatcgcccaaatg
aagcaagagttcgaactacgttttgaagataaaaaacgtaaattgacccaaggtgacgag
ttgccacctggtgttattaagatggttaaagtgtatgtggccgttaaacgtcgcttacaa
cctggcgataaaatggccggccgtcacggtaacaagggtgtagtttctaagatcttgcca
gttgaagatttgccacacatggcagatggtacaacggttgatatcgtgttgaacccattg
ggcgttccatcacgtatgaatatcggtcagattcttgaagtgcatttgggttgggcagct
aaagggattggtcaacgaattgatgcgatgctacgtgaacaacgtaatgttgctgaagtt
cgtgaaaccttgaacaagatttataagtcaaaaggcaaagctgaagatatcagcgaattg
tctgacgctgaaatcatgaatttggcgcaaggcttgcgtactggtatgacttttgcaagt
ccagtatttgacggtgcagatgagtctgaaattcaagaaatgttgcaattagcgtatccg
gatgaagatccacgcacgcagcaacttgacttcaatagcagcaaaactcagatgcaactg
tttgatggacgcactggtgaaccatttgaacgtaaagtgactgtgggtgtgatgcattac
ttgaaacttcatcacttggtggatgacaagatgcatgctcgttcaactggaccgtattct
ctcgttactcaacagccattgggcggtaaagctcagttcggtggtcagcgtttcggtgag
atggaggtttgggcattggaagcttatggtgcagcatatacattgcaagagatgctgact
gtgaagtccgatgacgtgaatggccgtactaaagtttacgaaaacattgtgaagggtgat
caccgcattgatgctggcatgccagagtcgttcaatgtattggttaaggaaatccgctcg
ctcggtatcgatatcgatctggaaacctactaa
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integrated database retrieval system
