Deefgea tanakiae: K4H28_13735
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Entry
K4H28_13735 CDS
T08586
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dtk
Deefgea tanakiae
Pathway
dtk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K4H28_13735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtk03019
]
K4H28_13735
Enzymes [BR:
dtk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K4H28_13735
Messenger RNA biogenesis [BR:
dtk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K4H28_13735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
UvrD-helicase
DegT_DnrJ_EryC1
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QZA77332
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All DBs
Position
2940290..2942170
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AA seq
626 aa
AA seq
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MSELNFASLGLAEPLLRAVADTGYTVPTPIQAQAIPLVIQGGDLLAAAQTGTGKTAGFTL
PILQLLLAKEPLESKGRPRVLILTPTRELAAQVEESVQTYSKYVKISSMVVFGGVNIRPQ
QTRLRNPLDILVATPGRLLDLVGQRSVDLSGIEILVLDEADRMLDMGFIHDIKKLMAIFP
KERQTLLFSATFSDEIKELADKLLKNPGLVEVARRNTTNELISQRVHLVDRDKKLPLLTR
LIQDGNWHQVLVFMRTKHACNKVAEKLNAAGITAMAIHGNKSQNARTAALAQFKSGELQV
LVATDIAARGLDIEELPHVVNFELPNVAEDYVHRIGRTGRAGCTGEAVSLVCVDELKLLA
EIERITKQDIPKFCLEGFEADLRVKPEPILRGGLGRDRPPRDPNRNPRAPRGQAVAGGAR
LNGARSKALAETAAAQSAAKSEVRAERRPRIEGETEQRRPRPEGTGEQRRPRTDGDNRRP
RAERPEGVAAEARRPRPEGGDNRRPRNDGAPRSSNPRNAPRNDSVLAAPAAPRRERINYD
EQQPMSNANTLPGELMRSGRSGQGQTRGYQGGGRNGGPGTGSTRNASDGFGAPRGDRPQQ
NRSGRPSSSRPTAALLGGSGSKRRGE
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacttaattttgctagcctagggctggccgaaccacttttgcgtgctgttgcc
gatactggctataccgtacccactccgattcaagcccaagcaattccactggttatccaa
ggtggcgacttattggccgcagcccaaacgggcaccggtaaaactgccggtttcacttta
cctattttgcaacttttgctcgccaaagaaccactagaaagcaaaggccgtccccgtgtt
ttgatcctcaccccgacgcgtgaacttgccgctcaggttgaagaatcagttcaaacctat
tctaagtacgtcaaaatcagctccatggtggtgtttggtggcgtgaatattcgcccacaa
caaactcgcctgcgcaatccgctggatattttggtcgcaacgccaggccgtttgctcgac
ttggttggacaacgctcagtggatttgtctggcatcgaaattctggtgctcgacgaagct
gaccgtatgctcgatatgggtttcatccacgacatcaaaaaattgatggcgattttcccg
aaagagcgtcaaacgctgctgttctcagccacgttctcagatgaaatcaaagaactcgct
gacaagctgctaaaaaacccaggcttagtcgaagtggctcgccgcaacaccaccaatgaa
ctgattagccaacgcgtgcatttggttgaccgcgataaaaaattgccgttgctaacgcgc
ttgattcaagacggcaattggcaccaagttttagtgtttatgcgcaccaaacatgcgtgt
aataaagttgccgaaaaactcaacgccgctggcattaccgcaatggcgattcacggcaat
aaaagccaaaacgcgcgtactgccgctttggctcagttcaagtctggcgagttacaagtt
ttggttgcgaccgacatcgccgcacgtggattggatatcgaagagttgccacacgtggtg
aactttgaattgccgaacgtggccgaagattacgttcaccgcattggccgcactggccgc
gcaggttgcacgggtgaagcagtttcactggtctgcgttgatgagctgaaattactcgca
gaaatcgaacgcattaccaaacaagacattccaaaattctgcctcgaaggtttcgaagcc
gatttacgtgttaaaccggaaccgattctacgtggtggcttgggtcgtgatcgcccaccg
cgcgatccaaaccgcaatccacgtgcaccgcgtggtcaagccgttgcgggtggcgcacgc
ttaaacggcgcacgcagcaaagcgttggcagaaactgcggcggcgcaatcagcagcaaaa
agcgaagttcgtgctgaacgtcgcccacgtatcgaaggcgaaaccgaacaacgtcgacca
cgcccagaaggtacaggcgagcaacgccgcccgcgcacggatggcgacaatcgccgtcca
cgcgcagagcgtcctgaaggcgtagcggctgaagcacgccgccctcgcccagaaggtggt
gataaccgtcgcccacgcaacgatggcgcaccgcgcagcagcaatccacgcaatgcacca
cgtaatgactcggtattggcagcgcctgcggcaccgcgccgcgagcgcatcaattacgat
gaacaacaaccaatgagcaatgccaacaccttgccaggtgaactcatgcgcagcggtcgt
agcggtcaaggtcaaacgcgcggctaccaaggtggcggccgtaacggcggcccaggtacg
ggctcaacacgcaatgccagcgatggctttggcgcaccacgtggtgatcgtccgcaacaa
aatcgcagtggccgtccatcaagcagccgcccgactgcagcacttttgggtggcagcggc
agtaaacgtcgcggcgagtaa
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