Dietzia timorensis: BJL86_0641
Help
Entry
BJL86_0641 CDS
T04608
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
dtm
Dietzia timorensis
Brite
KEGG Orthology (KO) [BR:
dtm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtm03019
]
BJL86_0641
Enzymes [BR:
dtm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BJL86_0641
Messenger RNA biogenesis [BR:
dtm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BJL86_0641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
AAA_11
AAA_19
ResIII
Cas3-like_C_2
Helicase_RecD
AAA_22
nSTAND3
AAA_25
HA2_N
UvrD-helicase
PaRep2b
Motif
Other DBs
NCBI-ProteinID:
ANI91443
UniProt:
A0A173LHS3
LinkDB
All DBs
Position
complement(686920..689583)
Genome browser
AA seq
887 aa
AA seq
DB search
MARPLPFDDSAVDAIGAGLPASALIDPLRTALTREQVAVVAAPPGSGKTTLVPPVMAQLF
ADDGGRIVVTQPRRIAARAAAHRLAELTGTRVGELAGFTVRGERRMSAGAVVEFCTPGVL
LRRLIADPALEGTSGVICDEVHERALDTDLVLAMAAELRELRPELALVAMSATVDAPRFA
ALLGGDGPPAQVLNSPATPHELRTLYAPAPGPRQDGRGVTDDYCRHIAQTTAEALAEHPG
DALVFLPGVREIERAAGHLEAVLRSRCADVEVLQLHGSLPAREQDRVLRPAEPGGRRRAI
VASSVAESSLTVPGVRIVVDSCLSREPRLDAARGVSGLVTVSCSQDSAIQRAGRAARTAD
GVAIRAIAEADWSRLRTHRTPEIAAADLTPAALDLACWGTPRGEGLPLLDPPPRAAIGRA
ESALFPIGAVDDAGGATPLGRLLARVPADPRIARALLAAVALTPAAVDTAAEVTAALGDP
PRRQDASLPAVIDELRAGRHPGAERWRREAERLAKLARSLSGDYAAATAGAGAHTHPVPA
LPPKGDARLTGFVTALAFGERIARRVSPAGDSGRSAVFKLASGTQVLLAPGSGIENSEWI
VVAEAGRVGERVLARLAAPLSEADALAAGHALLREDESTIFNGERLQARLVRRLGEIELS
STPTRPTPGPARRAIAEWIGAQDGNSGVIDWFDTVVGRDSSAASLRRRLACAREAFGDPW
PDMSAAGLAAQAEEGLAQFVDDLAAGTAPARIDAASALRGLVPWPEAGRIDELVPERLSL
PSGNSHRVRYPEPGSDERPAVSAKLQEFFGLAESPTVAGGRIPVTAELLSPAGRPLAVST
DLTFFWDNAYPGVHAEMRGRYPKHPWPENPWEATATAQTNRRSAKNS
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
gtggctcggcccctccccttcgacgactccgcggtcgacgccatcggcgcgggtttgccg
gcctcggcgctcatcgatccacttcgaacggcgctcacccgcgagcaggtcgccgtcgtc
gccgcgccgcccggtagcggcaagacgactctcgtccctccggtgatggcacagctcttc
gccgatgacggcggacgtatcgtcgtcacccagccccgccggatcgcggcgcgcgccgcc
gcacatcgcctggccgagctcacgggaactcgggtcggcgagctcgccgggtttaccgtg
cgcggcgagcggcggatgtccgccggcgccgtggtggaattctgcacgccgggggtttta
ctgcgcaggctgatcgcggacccggcgctggaggggacgtccggcgtcatatgcgatgag
gtgcacgaacgcgcgctcgataccgatctcgtgctggcgatggcggccgaactccgcgag
ctgcgaccggagctcgcgctcgtcgcgatgagtgcgacagtcgacgcgccccggttcgcc
gcgctgctcggcggcgacggcccgcccgcacaggtgctcaattcgccggccacgccgcac
gagctgcgcaccctgtacgcgccggcgccggggccgcggcaggacgggcgcggggtcacc
gacgactattgccgccacatcgcccagaccaccgccgaggcgctcgccgagcaccccggg
gacgctctggtgttccttccgggcgtgcgcgagatcgagcgcgccgcgggccacctcgag
gccgtccttcgaagccgctgcgcggatgtagaagtgctgcagctgcacggttcgctgcct
gcccgagagcaggaccgggttctgaggcctgccgaaccgggtgggcgccgtcgcgcgatc
gtcgcgtcgtcggtcgcggagtcctcgctcacggtgccgggcgtgcggatcgtcgtcgat
tcgtgcctgtcccgggagcctcggctcgacgcggcgcgcggcgtgtcgggcctggtgacg
gtgtcgtgttcgcaggactcggcgatccagcgcgccggccgtgccgcgcgcaccgccgac
ggagtcgccatccgcgcgatcgccgaggccgattggagcaggttgcgcacccaccgcacg
ccggagatcgccgcggcggacctcacccccgcggcgctcgatctcgcgtgctggggaacg
ccgcgcggcgagggactgccgctgctcgaccctccgccgcgcgccgctatcgggcgggct
gaatccgcgctgttcccgatcggagcggtggatgacgccggaggtgccaccccgctcggc
cggctcctcgcgcgcgtccccgcggacccgagaattgcccgcgccctgctcgcggcggtg
gccttgaccccggcagcagtagacacggccgccgaggtgaccgccgccctcggcgatccg
ccacggcgccaggacgcatcgctccccgcggtgatcgacgagttgcgcgcgggtcgccac
ccgggcgcggagcgctggcgtcgcgaagccgagcggctcgcgaagctggcgcgttcactg
tccggagattacgcggccgcgacggccggggccggcgcccatacgcacccggtccccgca
ctcccgccgaaaggggacgcgcggttgacggggttcgtcaccgctctcgcgttcggcgaa
cgcatcgcgcgacgtgtctccccagcgggcgattccggccgctcggcggtcttcaagctc
gcctccggcacgcaggtcctgctcgccccgggttcggggatcgagaattccgaatggatc
gtcgtcgccgaggcgggccgcgtcggcgaacgggtgctcgcccgcctcgccgctccgctg
tccgaggccgatgcgctcgccgccggccacgcgctgctccgagaggacgagtccacgatc
ttcaacggcgagcgtctgcaggcccgtctcgtgcgcaggctcggcgagatcgagctctcc
tcgacccctacccggccgacgccgggccccgcgcgtagggccattgcggagtggatcggc
gcgcaggatgggaactccggcgtcatcgattggttcgacactgtagtcggccgcgactcc
tcggccgcctcgctgcgccggcgcctcgcgtgtgcgcgggaggctttcggcgatccgtgg
ccggacatgagcgccgccggactcgccgcgcaggccgaggaggggctcgcgcaattcgtc
gacgatctcgccgcaggtaccgcgcccgcgcgaatcgatgccgcgtccgcgcttcgcggg
ctcgtcccgtggccggaggcgggccgcatcgacgagctcgtccccgagcggctctcgctc
ccctcgggcaacagccatcgcgtgcgctatccggagcccggctccgacgagcggcccgcc
gtttcggcgaagctgcaggagttcttcggccttgccgaatcgcccacggtcgccggtggc
cggatcccggtcaccgcggaattgttgtccccggcggggcggccgctcgccgtcagcacc
gatctgacgttcttctgggacaacgcctatccgggggtgcacgcggagatgcgcgggcgc
tatccgaagcatccgtggcccgaaaacccttgggaggccacggctaccgcgcagaccaat
cgcaggtcggccaaaaactcttaa
DBGET
integrated database retrieval system
