Dietzia timorensis: BJL86_1808
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Entry
BJL86_1808 CDS
T04608
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dtm
Dietzia timorensis
Pathway
dtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJL86_1808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtm03019
]
BJL86_1808
Messenger RNA biogenesis [BR:
dtm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJL86_1808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
ANI92579
UniProt:
A0A173LLP8
LinkDB
All DBs
Position
complement(1966019..1968163)
Genome browser
AA seq
714 aa
AA seq
DB search
MTESQNRNRGRSRVKRNAGPPSENREPQNTNAAGAQNNAPKNAPTFTEPQAPAASTKDSG
NQGSNKSDKSGGDKGNRGNNNSNNSGNGNNGNNGNNGGSGRNGGNRNSGRGGKNNSGRGG
NRNSGGRGRGGNNDTATAQHGGMKSMQGGDMTATLPRPSKPKKGALRIVALGGISEIGRN
MTVFEYNRKLLIVDCGVLFPSSDEPGVDLILPDFSMLEDRLDDIEALVLTHGHEDHIGAI
PFLLKLRPDIPVIGSRFTLALVEAKCREHRIRPNVEVVNESSKTNRGAFNVEYFAVNHSI
PDALGIVIQVGGNRIIHTGDIKLDQLPMDKRPTDLPAMARYGDKGVDLLLMDSTNATTPG
VSESESGITKSMERVIRGARKQVVVACFASNVYRVQQIIDAAAQAGRKVALNGRSMVRNM
EIAMDLGFLNAPDNVIVDMDHAAKLPPEKLVVVTTGTQGEAMAGLSRMARREHRQVNLNS
GDTVVFSSSLVPGNEEAVFGVMNRLSQMGVEVITSREANVHVSGHGYAGELLFIYNAVRP
RNVMPVHGEWRHLRANKDLAIKTGVPEANTVLAQNGVVVELLDRKVSVVGQIPVGNLYVD
GLTTGDIGDTVLADRTVLGEGGFIAATVVVDPRNGRPVSRPQLVGKGFTDDPGALSPAVE
LVENALLDLAGEGENDPYRMAQVVRRVIGKWVSDKWRRKPMIVPTVITSAVPAE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatcccagaatcgcaaccggggacgcagccgcgtgaagcgcaatgcaggaccc
ccgagcgagaatcgggagccgcagaacaccaacgccgccggcgcgcagaacaatgcgccc
aagaatgctccgaccttcaccgaaccccaggcgcccgccgcatccaccaaggattcgggc
aaccaggggtcgaacaagtcggacaagagcggcggcgacaagggtaatcgcggcaacaac
aactcgaacaattccggcaacggcaacaacggcaacaacggcaacaacggtggttcgggc
cgcaatggcggtaaccgaaactccggtcgcggaggcaagaacaactccggccggggcggc
aaccgcaactccggtggccgtggccgcggcggcaacaacgacaccgccaccgctcagcac
ggcggtatgaagtcgatgcagggcggcgacatgaccgcgactctgccgcgtccgtcgaag
ccgaagaagggcgcgctgcgcatcgtcgcgctcggcggcatttcggagatcggccgcaat
atgacggtcttcgagtacaaccgcaagctcctcatcgtcgactgcggcgtgctattcccg
agctccgacgagcccggcgtcgacctgatccttccggatttctcgatgctcgaggaccgt
ctcgacgacatcgaggcgctcgtgctcacccacggccacgaggaccacatcggcgcgatc
ccgttcctcctcaagcttcgcccggacatcccggtaatcggctcgcgcttcacgctcgcg
ctcgtcgaggccaagtgtcgcgagcacaggatccgacccaacgtcgaggtcgtcaacgaa
tcctccaagacgaatcgcggcgcattcaacgtcgagtacttcgccgtcaaccactcgatt
cccgacgcgctcggcatcgtgatccaggtcggcggcaaccggatcatccacaccggcgac
atcaagctcgaccagcttccgatggacaagcgtcccaccgacctccccgcgatggcgcgg
tatggcgacaagggcgtcgatctgctgctcatggactccaccaacgcgacaacccccggt
gtgtccgagtcggagtccggcatcaccaagtcgatggagcgtgtcatccgcggagcgcgc
aagcaggtcgtagtggcctgcttcgcctctaacgtctaccgcgtccagcagatcatcgac
gccgctgcgcaggccggccgcaaggtcgccctcaacgggcgttcgatggtccgcaacatg
gagatcgcgatggatctgggcttcctcaacgccccggacaacgtcatcgtcgatatggac
cacgctgcgaagctgccgccggagaagctcgtcgtcgtcaccacgggcacccagggcgag
gctatggccggcttgtcccgcatggcccgccgcgagcaccgccaggtcaacctcaacagc
ggtgacacggtcgtgttctcctcctcgctcgtcccgggcaacgaggaagcggtcttcggc
gtgatgaaccgcttgtcgcagatgggtgtcgaggtcatcaccagccgcgaggcgaacgtc
cacgtctccgggcacggttacgccggagagctgctgttcatctacaacgcagtgcgtccg
cgcaacgtcatgcccgtccacggcgaatggcgccacctgcgcgcgaacaaggacctcgcg
atcaagaccggtgtgcccgaggccaacacggtgctcgcgcagaatggtgtcgtcgtggag
ctgctcgaccgcaaggtctcggtcgttggccagatccccgttggaaacctctacgtcgac
ggtttgacgacgggtgacatcggcgacaccgtgctcgccgaccgcaccgtcctcggcgag
ggcggcttcatcgccgccaccgtggtcgtcgatccccgcaacggccgccccgtttcgcgc
ccgcaactcgtgggcaagggcttcacggacgacccgggcgcgctgtccccggcggtcgag
ctcgtcgagaacgcgctgctagacctggcaggcgaaggcgaaaacgatccttaccggatg
gcgcaggtcgttcgccgcgtcatcggcaagtgggtctcggacaagtggcgccgtaagccg
atgatcgtccccacggtgatcacctcggcggtacccgcggaatag
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