Dietzia timorensis: BJL86_2006
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Entry
BJL86_2006 CDS
T04608
Name
(GenBank) Cold-shock DEAD box protein A-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dtm
Dietzia timorensis
Pathway
dtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJL86_2006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtm03019
]
BJL86_2006
03009 Ribosome biogenesis [BR:
dtm03009
]
BJL86_2006
Enzymes [BR:
dtm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJL86_2006
Messenger RNA biogenesis [BR:
dtm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJL86_2006
Ribosome biogenesis [BR:
dtm03009
]
Prokaryotic type
rRNA helicases
BJL86_2006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
XdhC_C
Motif
Other DBs
NCBI-ProteinID:
ANI92773
UniProt:
A0A173LLI8
LinkDB
All DBs
Position
complement(2181728..2183599)
Genome browser
AA seq
623 aa
AA seq
DB search
MENDQADSATNDSTNAAAEAAPEEKKSEGPTFAEMDLHPKVLDAVTSVGYESPSAIQEAT
IPLILSGRDVVGLAQTGTGKTAAFALPILSLIDHDLRAPQALVLAPTRELALQVAEAFVT
YSSKLNGVNILPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSGLRHLVLD
EADEMLTMGFQEDVERVLEDTPEATQVALFSATMPNGIRRISQQYLTDPAEVKVKSKTAT
ASTIEQRYVIVQHRDKLDALTRVLEVEDFDAMIMFVRTKQATEELAERLRARGFSAAPIN
GDIPQNLRERTIDQLKDGRIDILVATDVAARGLDVPRISHVVNYDIPHDVESYVHRIGRT
GRAGRSGHALLFVTPRERRLLSQIERATRQSLQEIQLPSVDDVNEMRMTKFAESITESLQ
DSNLALFRRLVEQYASEHSVPMEDIAAALATQSRNSDEFLMKEQPKQRRNDRGDRGDRGP
RRDFDDRGDRGPRRDNRRDSGGNFSMYRIAVGKRSGVKPGSIMGALANEAGLKGSDIGRI
QIRFDHTLVELPSHLTSGDIDQMKDIVVSGQAIDIRPDAGPPSGRPGSHRSGGDRGDRGD
RGDRGKGGFRGNNNRRGDRRNFR
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgaccaggccgattcggccacaaacgactcgacgaacgccgccgcggaggcg
gcgcctgaggagaagaagagcgaaggccctacctttgcggagatggacctgcatcccaag
gttctcgacgccgtcacctcggtcggttacgagtcgccgtcggcgattcaggaagcgacg
atcccgctgatcctttcggggcgtgacgtcgtgggcctcgcgcagaccggcaccggtaag
acggccgcgttcgcactgccgatcctctcgctcatcgatcacgacctgcgtgccccgcag
gcactggtcttggcgccgacccgtgagctcgcgctccaggtcgccgaggccttcgtcacc
tattcctccaagctcaacggcgtcaatatcctgccgatctacggcggccaggcctacggc
atccaactgtcggggctgcgccgcggcgcacagatcatcgtcggcacaccgggccgcgtg
atcgatcacctcgaaaagggcaccctcgacctttcgggcctacgccacctcgtgctcgac
gaggccgacgagatgctcacgatgggcttccaggaggacgtcgaacgcgtcctcgaggac
accccggaggccacccaggtagcgctgttctcggcgaccatgcccaacgggatccgccgc
atctctcagcagtacctcaccgatccggcggaggtgaaggtcaagtcgaagaccgccacc
gcgtcgacgattgagcagcgctacgtcatcgtccagcaccgcgacaagctcgatgcactc
acccgcgtgctcgaggtcgaggacttcgacgcgatgatcatgttcgtgcgcacgaagcag
gcgaccgaggagctcgccgagcgtctgcgcgcccgcggcttctcggccgcgccgattaac
ggtgatatcccgcagaacctccgcgagcgcacgatcgaccagctcaaggacggccgcatc
gatatcctcgtcgcgaccgacgtcgccgcccgtggactcgacgtgccccgcatcagccac
gtcgtcaactacgacatcccgcacgacgtcgagtcctacgtccaccggatcgggcgtacc
ggtcgcgcggggcgcagcggccacgccctgctgttcgtcacgccccgtgagcgccgcctg
ctctcgcagatcgagcgcgccacccgccagtcgctgcaggagattcagctcccctcggtc
gacgacgtcaacgagatgcgcatgacgaagttcgccgagtcgatcaccgagtcgctgcag
gactcgaacctcgcgcttttccgccgcctcgtcgagcagtatgcctccgagcactccgtg
cccatggaggacatcgccgccgcgctcgcgacccagtcgcgcaactccgacgagttcctt
atgaaggagcagccgaagcagcgtcgcaacgatcggggcgatcgcggcgaccggggaccg
cgccgcgacttcgacgaccgaggcgaccggggaccgcgccgcgataaccgccgcgattcc
ggtggcaatttctcgatgtaccgcatcgccgtcggcaagcgttcgggggtcaagcccggc
tcgatcatgggcgccctcgccaatgaggcgggactcaagggctcggacatcgggcggatc
cagatccgtttcgaccacaccctcgtcgagcttccctcacacctcacctcgggcgacatc
gaccagatgaaggacatcgtcgtgtccggccaggcgatcgatatccggccggatgccgga
ccgccgtcggggcgtcccggctcccaccgctccggcggcgatcgcggtgaccgcggagat
cggggcgatcgcggcaaaggcgggttccgcggcaacaataaccgccgcggcgaccgccgc
aacttccgctag
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