Dietzia timorensis: BJL86_2185
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Entry
BJL86_2185 CDS
T04608
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dtm
Dietzia timorensis
Pathway
dtm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dtm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJL86_2185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtm03400
]
BJL86_2185
Enzymes [BR:
dtm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJL86_2185
DNA repair and recombination proteins [BR:
dtm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BJL86_2185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ANI92951
UniProt:
A0A173LN46
LinkDB
All DBs
Position
complement(2362996..2366697)
Genome browser
AA seq
1233 aa
AA seq
DB search
MAQAEGAGALRGVFAEFSHRAPGAMLREAAGKDRAVVQAAEALRPFVVGELAAEAPLLVV
TATERESEELAAAVAALTSYEVAQFPSWETLPHERLSPGKETVGQRLKVLHEMLAGPRGG
EGTRVVVASARAVIQPVSPAAARRDPIELRVGGHVDPTELVARLGVFAYAREDMVSRRGD
MAVRGGIVDIFPTTHEYPVRVEFDDDEIVSIREFLVADQRSLTEGALEAIDLYPCREVLL
TEEVRERAGALATEHPDNPTLRELLESLAAGVPRDGMEALASVLQPGEQQILPLLMRAGT
RVIVCDPDKVRRRAGDLAAAGREFLEASWTAATMGSDAPIDSESLDLSGSGYLTFSEVRE
QSIEAEIPWWQLVPQGFLAEEDAGALIELPSQDPLAPRGKEDQFAAFFTEARKGVGAGDT
YVAVTNSKGSATRLVERAHEAELAAKVVDGGEELPAGHLAVLVGPLIDGFALAGAAGQGT
TTEDDGGAGSTRGRLVLLCESELSGNRVAGRSGGKTKHAKRRNQVDPLALKSGDLVVHEQ
HGIGRFVEMIERTTRGKNASGRREYLVIEYAASKRGAPPDRLFVPMEQLGQLSRYVGGEA
PALSKMGGADWQNTKRKARKAVREIATELVALYAKRQSAPGHAFAPDTPWQQEMEEGFPY
TETIDQATAIEDVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVSVLVPTT
LLAQQHLETFAERMAGYPVTVRGLSRFTSDAEAKEILAGLADGTVDVVIGTHRLLATGVR
WKKLGLVIVDEEQRFGVEHKEHIKALRNAVDVLTMSATPIPRTLEMSLAGIREMSQILTP
PQDRLPVLTYVGAYSDKQVAAAIRRELLREGQVFFVHNRVSSIDATAARLRDLVPEARVA
VAHGQMGEEQLEQTVNGFWNRDFDVLVCTTIVETGLDISNANTLIVDRAENLGLSQMHQL
RGRVGRSRERGYAYFLYAPDRTLTETAYDRLAVIAQNNDLGAGMAVAMKDLEQRGAGNVL
GGEQSGHIAGVGFDLYVRLVGEAVEAFRAVADGETPQAETESREMRIDLPVDAYLPADYV
DSERLRLEAYRKLAQAQSFDDVDSVIEELFDRYGPLPEPARRVAAVSRLRIVAAEYGVSD
VVVAGSRIRIAPLTLLDSQQMRLKRLYPSAMYKATSQVVQLPLPKSAAARPGAGGAPEAR
DDELLQYVADFLTAMAGKPEGSVVVAQPELSAR
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaggcagaaggcgcgggggcactacgcggagtattcgcggagttctcccaccgc
gcgcccggggccatgcttcgcgaggcggcggggaaggaccgcgcggtcgtgcaggccgcg
gaggcgctgcgcccgttcgtcgtcggcgagctcgccgcggaggcgccgctgctcgtcgtc
accgccaccgagcgggagtccgaggagctcgccgctgcggtcgcggcgctcaccagctac
gaggttgcccagttccccagctgggaaacgctgccgcacgagcgcctgtctccgggcaag
gaaaccgtgggccagcggctcaaggtgctgcacgaaatgcttgccgggcccaggggaggc
gagggcacgcgtgtcgtggtggcgtcggcgcgcgccgtcatccagcccgtgtccccggcc
gccgcgcggcgcgaccccatcgagctgcgcgtgggtgggcatgtggacccgaccgagctt
gtggcgcggctcggcgtgttcgcgtatgcgagggaggacatggtttcccggcgcggggac
atggccgtgcgcggcggcatcgtcgacattttcccgaccacgcacgaatacccggtgcgc
gtcgagttcgatgatgatgagatcgtctccatccgcgagttcctcgtcgccgaccagcgc
tcgcttaccgaaggcgcgctcgaggcgatcgacctgtacccgtgccgtgaggtgcttctc
accgaggaggtgcgcgagcgggccggcgcgctggccaccgagcatcccgataatcccacc
ctgcgcgagctgctcgaatcgctcgctgcgggcgtgccgagggacgggatggaggcgctc
gcgtcggtgctccagcccggcgagcagcagatcctgccgctactgatgcgcgccggcacg
agagttatcgtgtgcgatcccgataaggtgcgccgccgcgccggagacctcgccgccgcc
gggcgcgagttcctcgaggcgtcgtggaccgcggcgaccatgggctcggacgcgccgatc
gattccgaatcgctcgacctgtccggctccggttatctcacgttctccgaggtgcgcgag
cagtccatcgaggccgagatcccgtggtggcagctggtgccgcagggcttcctcgccgag
gaggatgccggcgcgctcatcgaactcccctctcaggacccgctggcgccgcgtggcaag
gaggaccagttcgccgcgttcttcaccgaggctcgcaagggcgtgggcgcgggggatacg
tacgtcgccgtcaccaattccaagggctctgccacgcggctggtcgaacgcgcccacgag
gcggagctcgctgcgaaagtggtcgacggcggcgaggagcttcccgccgggcacctcgcc
gtgctcgtcggtccgctcatcgacggcttcgcgctcgcgggtgcggccggccaagggaca
accaccgaggatgacggcggagccggcagcacccgcggccgcctcgtgctcctgtgcgaa
tcggaactctcgggtaaccgcgtcgccgggcgttccggcggcaagaccaagcacgccaag
cggcgcaaccaggtcgatccgctcgcactcaagtccggcgatctcgtcgtccacgaacag
cacggcatcggccgcttcgtggagatgatcgaacgcaccacccgcggtaagaacgcctcg
ggccggcgcgaatacctggtcatcgaatacgccgcgtccaagcggggcgcgccgccggac
cgtctgttcgtgccgatggagcagctcgggcagctctcgcgctacgtcggcggggaggcg
cccgcgctgtcgaagatgggcggcgcggactggcagaacaccaagcgcaaggcgcgcaag
gcggtccgcgagatcgcgaccgagctcgtcgcgctgtatgccaagcggcagtccgcgccc
gggcacgccttcgccccggacaccccgtggcagcaggagatggaagaaggcttcccgtac
accgagacgatcgaccaggccaccgccatcgaggacgtcaaggcggacatggaaaagccg
gtgccgatggaccgagtcatcgtcggtgatgtcgggtacggcaaaaccgaggtcgcggtg
cgcgccgcgttcaaggccgtgcaggacggcaagcaggtctccgttctcgtgcccacgact
ctgctcgcccagcagcacctcgaaacgttcgccgagcgcatggctggttacccggtcacg
gtgcgggggctgtcgcgcttcacctctgacgccgaggcgaaggaaattctcgccggcctc
gccgacggaacggtggacgtggtgatcggcacgcaccgtctgctcgccaccggcgtgcgg
tggaagaagctcggcctggtgatcgtcgacgaggaacagcgcttcggcgtcgagcacaag
gagcacatcaaggcgcttcgcaacgcggtggacgtgctcacgatgtcggcgacgccgatc
ccacgcacgctcgagatgtcgctcgccgggatccgcgagatgagccagatcctcacgccc
ccgcaggaccggcttccggtgctcacctacgtcggcgcttactcggacaagcaggttgcg
gccgctatccggcgcgagttgctgcgcgaggggcaggtgttcttcgtccacaaccgcgtg
tcctcgatcgacgcgacggcggcacggctgcgcgacctcgtccccgaggcgcgcgttgcc
gtggcgcacgggcagatgggagaggagcagctcgagcagaccgtcaacggattctggaat
cgcgacttcgacgtcctcgtgtgcacgacaattgtagagaccggtctcgacatcagtaat
gccaatacgttgatcgtcgaccgggccgaaaacctcggcctgtcgcagatgcatcagctg
cgcggacgcgtgggccgctcccgcgagcgtggctacgcctacttcctctacgcccccgac
cgcacgctcaccgagaccgcgtacgaccgcctcgcggtgatcgcgcagaacaacgacctc
ggcgccggcatggccgtggcgatgaaggacctcgaacagcgcggcgccggcaacgtgctc
ggcggcgaacagtccgggcacatcgccggagtcggcttcgacctgtacgtccggctcgtc
ggcgaggcggtcgaggcattccgcgccgtcgccgatggcgagacgccgcaggccgagacc
gagtcccgcgagatgcggatcgacctgcccgtcgacgcctacctgcccgcggattacgtc
gattcagagcggctgcgcctcgaggcgtaccgcaagctcgcccaggcgcagagcttcgac
gacgtcgattcggtcatcgaggaactcttcgaccggtacggcccgctgcccgagcccgcg
cggcgcgtcgcggcggtgtcgcggctgcggatcgtcgctgccgaatacggggtgtccgac
gtggtggttgccggctcgcgtatccggatcgccccgttgactctgctcgactcgcagcag
atgcggctcaagcggctgtacccgtctgcgatgtacaaggcgacctcccaggtcgtgcag
ttgccgctgccgaaatccgcggcggctcgccccggcgcgggcggcgcccctgaggctcgg
gacgatgagctgctgcagtacgtcgccgatttcctcacggcgatggccggcaagcccgaa
ggctcggtcgtcgtcgcccagccggagctctcggcgcgatga
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