Dietzia timorensis: BJL86_2481
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Entry
BJL86_2481 CDS
T04608
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dtm
Dietzia timorensis
Pathway
dtm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dtm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJL86_2481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtm03021
]
BJL86_2481
03400 DNA repair and recombination proteins [BR:
dtm03400
]
BJL86_2481
Enzymes [BR:
dtm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJL86_2481
Transcription machinery [BR:
dtm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJL86_2481
DNA repair and recombination proteins [BR:
dtm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJL86_2481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPN1_C
TarH
Motif
Other DBs
NCBI-ProteinID:
ANI93245
UniProt:
A0A173LLT5
LinkDB
All DBs
Position
complement(2667571..2671515)
Genome browser
AA seq
1314 aa
AA seq
DB search
MFDVNFFDELVISLATAEDIRNWSYGEVKKPETINYRTLKPEKEGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYYKGVPSRLGYLLDI
APKDLDKIIYFAAYVVTSVDEELRHNEMSTLEAQIVEEKKMIEDERDSDIDARAKKAEAD
LAELEAEGAKADAKRKVKDAGEKEMKKIRDGARRELDALDEIWDTFVKLDKNQLIQDENL
YRELDDRFGEYFTGAMGAEAIQQLLEDFDLEAEAEILRDVIRNGKGQKKIRALKRLKVVA
AFQGSGNHPAGMVLDCVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVSNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLSHAQNIKSAKRMVERQR
DQVWDVLEEVIAEHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGRPLAMPRLDMVTGLYYLTRLDEGAKGSYE
APVKDATAKGVYSTPAEAIMAVDRGELDIHSEILVRMTTQRPLPEIEAEQFPDGWTSGQE
WETNTTLGRIMFNELLPADYPFVNEQMPKKRQAVIINDLAERYPMIVVSQTVDKLKDAGF
YWATRSGVTVAMSDVLVPPEKESILDDFEERSTKIETMHTRGFLTDDERKNDLVKLWQEA
TEKVGQAMEDHYPDDNPIPTIVRSGAAGNMTQIRSLAGMKGLVTRPNGDFIPQPIKSSFR
EGLTVLEYFMNTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTTNGIETTI
AEPDAAGNLIQDAHVETSTFARTLAEDAKDADGNVIVARGTDLGDPTIEALIAAGVTKVK
VRSVLTCTTGTGVCAECYGRSMATGQLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGKAPIASESGTVRLEEGERFYTITIEPDDQTMDDIVYEKL
SKRQGLAIVDKADGSQGPIADGDHINRGVSLLEGPADPHEVLQVTGPNGVQKHLVGEVQK
VYRSQGVSIHDKHIEVIVRQMMRRVSIIDSGATEFLPGSLVEKAEFAGENRNVLASGGQT
ASARPVLMGITKASLATDSWLSAASFQETTRVLTDAAINRRSDHLVGLKENVIIGKLIPA
GTGISNYRNVQVEPTEEARASAYSLPNYGQGFYGDEDRFSDGTGASVPLDDLVY
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgacgtcaacttcttcgatgagctcgtcatcagccttgccactgctgaagacatc
cgaaactggtcgtacggcgaagtgaagaagccggagaccatcaactaccgcaccctcaag
ccggagaaggagggcctgttctgcgagaagatcttcggccctacccgggactgggagtgc
tactgcggtaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgatcgaaggtgcgccgtgagcgcatgggacacatcgagcttgccgctccc
gtgacccacatctggtactacaagggcgttccgtcgcggctgggctacctgctcgacatc
gctccgaaggacctcgacaagatcatctacttcgcggcctacgtcgtcacctccgtcgac
gaggaactgcgccacaacgagatgtccactctcgaggcgcagatcgtcgaagagaagaag
atgatcgaggacgagcgtgactccgacatcgatgcccgggccaagaaggcggaggccgac
ctggccgagctcgaggccgagggcgccaaggccgatgccaagcgcaaggtcaaggacgcc
ggcgagaaggagatgaagaagattcgcgatggtgcccggcgcgagctggacgccctcgac
gagatctgggacaccttcgtcaagctcgacaagaaccagctcatccaggacgaaaacctg
taccgcgagctggacgatcgcttcggtgagtacttcaccggcgcgatgggtgccgaggcc
atccagcagctgctcgaggacttcgacctcgaagccgaggccgagatcctccgcgacgtc
atccgcaacggcaagggccagaagaagatccgcgccctcaagcgactcaaggtcgtcgcc
gcgttccagggctccgggaaccacccggccggaatggtgctcgactgcgtgccggtgatc
ccaccggaactgcgcccgatggttcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtatcgtcgcgtgatcaaccggaacaaccgcctcaagcgtctcatcgacctg
ggtgcgccggagatcatcgtcagcaacgaaaagcgcatgctccaggaatccgtggacgcg
ctgttcgacaacggccgtcgcggccgtccggtcaccggaccgggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccgtttccgtcagaacctgctcggtaag
cgcgtcgactactcgggtcgttccgtgatcgtcgttggcccgcagctcaagctgcaccag
tgtggcctgccgaagctcatggcgctcgagctgttcaagccgttcgtgatgaagcgtctc
gtggacctgtcgcacgcgcagaacatcaagtccgccaagcgcatggtcgagcgtcagcgc
gaccaggtgtgggacgtgctcgaagaggtcatcgccgaacacccggtgatgctcaaccgt
gcacctaccctgcaccgcctcggcatccaggcgttcgagccgcagctggtcgagggtaag
gccatccagttgcacccgctcgtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggcagaggcgcgcatcctcatgctc
gcatcgaacaacattctgtcgccggcgtcgggacgtccgctcgccatgccccgtctggac
atggtcaccggcctgtactacctgacgcgcctcgatgaaggtgccaaggggtcgtacgag
gcgccggtgaaggacgcgaccgcgaagggcgtgtactcgaccccggccgaggccatcatg
gctgttgaccgcggcgagctcgacatccactccgagattctcgtgcggatgacgacgcag
cgcccgctgcccgagatcgaggccgagcagttccccgatggctggacctccggtcaggaa
tgggaaacgaatacgaccctcggtcgcatcatgttcaacgagctgctcccggcggactac
ccgttcgtcaacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgacctggca
gagcggtacccgatgatcgtggtctcgcagacggtcgacaagctcaaggacgccggcttc
tactgggcgacccgctcgggtgtcaccgtggccatgtccgacgtgctcgtcccgccggag
aaggagtcgatcctcgacgacttcgaagagcgctcgacgaagatcgaaaccatgcacact
cgtggtttcctcaccgacgacgagcgcaagaacgacctggtcaagctgtggcaggaggcc
accgagaaggtgggtcaggccatggaggatcactacccggatgacaacccgattccgacc
atcgtgcgctcgggtgcggccggtaacatgacccagattcgctcgctggcgggcatgaag
ggtctggtgacgaggccgaatggtgacttcattccgcagccgatcaagtcgtcgttccgc
gagggtctcacggttctcgagtacttcatgaacacgcacggcgcgcgtaagggtctggcc
gatacggcgcttcgtacggccgactcgggctacctcacccgccgcctcgtcgacgtttcg
caggacgtcatcgtccgcgagacggactgtggcaccacgaacggcatcgagacgacgatc
gcggagccggacgcggcaggaaacctcatccaggacgcgcacgtggagacctccacgttc
gccaggaccctggccgaggatgccaaggacgctgacggcaatgtcatcgtcgcccgcggc
accgacctcggcgatccgacgatcgaggcgctcatcgccgccggcgtcacgaaggtcaag
gtccgctccgtgctgacctgtacgaccggcaccggcgtgtgcgcggagtgctacggccgt
tcgatggccacgggccagctcgtcgacatcggcgaggccgtgggcatcgtcgccgcgcag
tccattggtgagcccggtacgcagctgacgatgcgtaccttccaccagggtggcgtcggc
gacgacatcaccggcggtctgccgcgtgtgcaggagctgttcgaggcgcgcgtgcccaag
ggcaaggcgccgatcgcttccgagtcgggcaccgtccgcctcgaagagggcgagcggttc
tacacgatcaccatcgagccggacgaccagacgatggacgacatcgtctacgagaagctg
tccaagcgacagggtctcgccatcgtcgacaaggccgacggttcgcaggggccgatcgcg
gatggcgaccacatcaaccgcggcgtctccctcctcgagggcccggccgacccgcacgag
gtgctccaggtgaccggaccgaacggcgtgcagaagcacctcgtcggcgaggtccagaag
gtgtaccgctcgcagggcgtgtcgatccacgacaagcacatcgaggtcatcgtgcgccag
atgatgcgtcgcgtgtcgatcatcgactccggtgcgaccgagttcctcccgggctcgctc
gtagagaaggccgagttcgccggcgagaaccgcaacgttctcgcttccggcggccagacc
gcctcggcccgtccggtgctcatgggcatcacgaaggcctccctggccaccgattcgtgg
ttgtccgcagcgtccttccaggagaccacccgcgtgctcaccgatgcggcgatcaaccgc
cgtagtgaccacctcgtgggcctcaaggagaacgtcatcatcggtaagctcatcccggcc
ggtaccggtatctccaactaccggaacgttcaggttgagcccaccgaggaggcacgcgcc
tcggcgtactcgctgccgaactatggccagggcttctacggtgacgaggaccgcttcagc
gacggcaccggagcctcggtgccgctggacgatctcgtctactag
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