Defluviitoga tunisiensis: DTL3_0359
Help
Entry
DTL3_0359 CDS
T03867
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dtn
Defluviitoga tunisiensis
Pathway
dtn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dtn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DTL3_0359 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtn03021
]
DTL3_0359 (rpoC)
03400 DNA repair and recombination proteins [BR:
dtn03400
]
DTL3_0359 (rpoC)
Enzymes [BR:
dtn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DTL3_0359 (rpoC)
Transcription machinery [BR:
dtn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DTL3_0359 (rpoC)
DNA repair and recombination proteins [BR:
dtn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DTL3_0359 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Exportin-5
RM44_endonuclase
Motif
Other DBs
NCBI-ProteinID:
CEP77688
UniProt:
A0A0C7NW64
LinkDB
All DBs
Position
I:388003..392949
Genome browser
AA seq
1648 aa
AA seq
DB search
MANVSSFQRKIAKIKIGVASPQIILANSNGEVTKPETLNHRTGKPEKDGLFCEKIFGPTK
DYECACGKYKGKKYEGTVCERCGVKVESKEARRRKMGHLELATPVSHIWYLKSSPSILSI
LLNIGVKDLENIIYYGSKRVVERAYLVLTSPENDALGYYPGEILYQKEYEIYSQYLDIHV
EPAVKTSSVKGLPVADISGKVDIKSELTETERELTWIIIKDETGIERKYPVFEGASIMVE
QDQQVEKGTPLADRFLYEDDYLTQKEYSLFMEYYPGTIEVERDIERDTPIVVITDLDKRF
AKRIGKKIGDILLEDEARAYEEVMKILNSRIKEEREKIINKTLAEDIDFPEKKFEKGLKI
TQDVLNQLLELGVKDVLAKDEEDNERIYQINKYEKFEAGFGAEAVQKLLKKIDLELLKAR
LESELDKLDKKSQKALKILRRLKLVNDFINSGNKPEWLITNLIPVIPPDLRPLIQIEGGR
FAATDLNDLYRKVINRNNRLKKLLEMDAPEIIVRNEKRILQQAVDSLIYNGRVGKPMTDR
NRRPLRSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIAVGPDLKLHECGLPKKMALELFKP
FVLAELLKGSNAASKSARKFKKTIIEKEMPEAWEVLEEVIKGHPVLLNRAPTLHRISIQA
FIPKLIEGNAIRLHPLVCPPFNADFDGDQMAVHIPLSNIAQAESKFLMLSRYNIISPANG
KPISMPGKDIIAGTYYLTMHEDDKFESTKLPKNPKDIGKDGFVRHVFSDSMEAIYAYEYF
KIIDSDIYLNEDHLEWKKSDFTLHEPISFRYENNNMVKTTIGKVIFNEAVPKDLINYSKK
MDKKELKNLIFATFEKYGIDKTAELLDSIKDFGFHYSTLSGLTISIRDVLLSPKREEIIE
EAKKQVLEIESLYEEGYLNDTERYKEIIQIWENTTNKVTEETAKTYRKYPFNPIWMMIES
GARGNIDQLKQLAGMRGLMADPSGKIIEVPITSNFKNGLSELEFFTSTHGSRKGSADTAL
RTSTAGYLTRRLVDVAQAITITEHDCGTEKGIEARELWSDGSKIENLSDFLFGRILIKDV
LDPETGNPVKDKKTHKEYKKDLMLNEEDAKSLASYNKEISVKKLLEYEEKTIDFDDLTNN
IYSYESLEDVIIDNKTLIKKGEEITKEIVEELLLRNIQSLPVKAYKSAVYVGEDLKINVD
GKQITLLKYQERIDLKTAKMLDKYGVEKVLVRPLIFIRSPLTCEAEEGICAKCYGMDLSN
YRLVNIGEAVGVIAAQSIGEPGTQLTMRTFHTGGIATAQDITQGLPRAEELFEARKKTKG
PEGIFAKSKGIVKAIERDEENKKGKKLRIILETSDGELDIYEADYKTKASVEIGDKVLPG
QRLTSGNIKPRKILKDLGVDELSNHLLSEIKKIYAEQGVDIHDKHFEIIIRQMINKVEVI
DGGDTHYMPGDLVPYNRVIKINEEIKNKNSSVEKNREIVIGKKLAKKVIIASENDDEESK
IYDQGTTITEDIIKDIIEAGIKEIEVYEEYKEIKTEDGTSQLVGTSKKYLINPKNIIRFE
RRLLRITKASLEREGWLSAASFQQTVQILTEAAIEGRVDKLKGLKENVIVGQPIPAGTGL
SLYTNLNYEVVQPEKEAEIATGREKSVG
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgtttcttcctttcaaagaaaaattgctaaaatcaagattggggttgcttca
ccacaaataattctagcaaattctaatggtgaagttacaaaacccgaaactttaaatcat
agaacaggaaaacctgaaaaagacggtttattttgcgaaaaaatatttggacctacaaaa
gattacgaatgcgcttgtggaaagtataaaggtaaaaaatatgagggcacagtttgtgaa
aggtgtggggttaaagtagaatcaaaagaagcaagaagaagaaaaatgggacatctggaa
ttagctacccctgtttctcatatttggtatcttaagtcatctccttccattctttctatt
cttttaaacataggcgttaaggatctagaaaatatcatttattatggctcaaagagagtg
gtagaaagagcttatttagttttaaccagtcctgaaaatgatgctttaggatattatcca
ggtgagattttatatcaaaaagaatatgaaatttattcacaatatttggatatacatgtt
gagccagctgttaaaacctcttcagttaaagggttgcctgtagctgatataagtggaaaa
gttgatattaaatctgagttgacagaaactgaacgtgaactaacttggataattatcaaa
gacgaaacgggtattgaaagaaaatatccagtttttgaaggtgcttctataatggtcgaa
caagaccaacaagttgaaaaaggaacacctttagctgatcgttttttgtatgaagacgat
tacctaacacaaaaagaatattctttatttatggaatattacccaggtacaatagaagtt
gaaagagatatagaaagagatactcctattgttgtcataaccgatttagataaaagattt
gccaaaagaattggtaaaaaaataggtgatattctacttgaagacgaagcaagagcttat
gaagaagtaatgaaaattttgaattcaagaataaaagaagaaagagaaaaaataataaat
aaaacattagctgaagacatcgatttccctgagaaaaaatttgaaaaaggtctaaaaatt
actcaagatgtgcttaatcagctattagaacttggcgtcaaggatgttttagcaaaagat
gaagaagataacgaacgaatttaccagataaacaaatacgaaaaatttgaagcaggattt
ggtgcagaagctgttcaaaagttattgaaaaagatagacctcgagctgctgaaagcaagg
ctagaatctgagttagataagttggataagaaaagtcaaaaggctttaaaaattttaaga
aggttaaaacttgtaaacgattttattaattctggaaacaaacccgaatggctgataaca
aatttaatccctgttattccacctgatttaagaccgttaatccaaatagaaggtggaagg
tttgctgcaactgacttaaatgacctgtacagaaaagtaataaacagaaataacagatta
aagaagcttctagaaatggatgcacccgaaataattgtaagaaatgaaaaaagaatatta
cagcaagccgttgactccctaatttacaatggacgtgttggaaagcctatgacagacaga
aacagaagacctcttaggtctttaactgatctgttaaaaggtaaaaaaggaagatttaga
agaaatcttttaggaaagagggtcgactattcaggtagagcagttattgctgtaggaccg
gatttaaaacttcatgaatgtggtttgcctaagaaaatggcgctagaattatttaaacct
tttgttttagcagaattgcttaaaggttcaaatgctgcaagtaaaagcgcaagaaagttc
aaaaaaacaataatagaaaaagaaatgcctgaagcctgggaagtccttgaagaagttata
aaaggccatcctgttttattaaacagagcacctactcttcataggatttcaattcaagca
ttcataccaaaactaatcgaaggaaatgcgataagattacatcctttggtatgtcctcca
tttaatgctgattttgatggagaccaaatggctgtacatattccgctttctaacatagct
caagcagagtctaaattcttaatgttgtctaggtataacattatatctcctgcaaatggt
aaacctatatctatgcctggaaaagatataattgcgggaacttactatttgactatgcat
gaagacgacaaatttgaaagcacaaaattacctaaaaatccaaaagatataggtaaggat
ggattcgttagacatgttttttctgatagtatggaagccatctatgcctatgaatacttc
aaaataattgactctgatatttacctcaatgaagaccacttagaatggaaaaagtcagat
ttcacattacatgaacctattagtttccgttatgaaaacaacaatatggtaaagacaacc
ataggaaaagttatattcaatgaagccgtaccaaaagatctgattaattattctaaaaag
atggataagaaagaattaaaaaatctaatctttgctacttttgaaaaatatggtattgac
aaaaccgcagaattattggatagcataaaagatttcggttttcactactcaactctatcg
ggattaactatatctataagagatgttctactatctccaaaaagagaagaaataatagaa
gaagctaaaaaacaggtattagaaatcgaatcattatatgaagaaggctatctaaatgat
actgaaagatataaagaaattatacaaatttgggaaaatacaacaaataaagttacagaa
gagactgctaaaacttatagaaaatatcctttcaatccaatatggatgatgatagaatca
ggagcacgaggcaacatagatcaattaaaacaattagctggtatgagaggtttaatggct
gatccatctggtaaaattattgaggtgcctattacctcgaattttaaaaatggattatca
gaactagaatttttcacatcaacacatggatcaagaaaagggtccgcagatactgcttta
agaacatctacagcaggttacctcacaagaagactcgtggatgttgcgcaagcaattaca
attacagaacatgattgtggcactgaaaaaggaatagaagccagagaactttggtctgac
ggttcaaaaattgaaaatctatcagattttctatttggcagaatattaattaaagatgtt
ttagatcctgaaacaggcaatcctgttaaggataaaaaaactcataaagaatataagaaa
gatttgatgttaaatgaagaagatgcaaaatccctagctagttacaataaagaaatttct
gtaaaaaagctccttgaatacgaagaaaaaacaatagactttgacgatttgactaataat
atttattcttatgaatcactagaagatgtaataattgacaataaaacccttattaaaaaa
ggtgaagagattacaaaagaaatcgtagaagagttattattacgcaatatacaatcatta
cctgtaaaagcatataaatcagcagtttatgtaggcgaagaccttaagatcaatgttgat
ggcaagcaaattactcttctcaaatatcaagaaagaattgatctaaaaactgcaaaaatg
ctagataaatacggagttgaaaaagtattagtaagacctttaatattcataagatctcct
ttaacctgcgaagccgaagaaggaatatgcgcaaaatgttatggaatggatctatcaaat
tataggttggttaacatcggtgaagctgtaggagtaattgctgctcaatcgattggtgaa
ccgggtacacagttgaccatgagaacattccacactggtggtattgctaccgcacaggat
attactcagggattaccaagagccgaagaattatttgaagcaagaaaaaagactaaaggt
cctgaaggaatctttgcaaaatcaaaaggcatagttaaagcaatagaaagagacgaagag
aataaaaaaggtaaaaaactaagaataatcttagaaacctctgatggagagttagatatt
tacgaagcggattacaaaaccaaggcctcagtcgaaattggagataaggtactacctggc
caaagattgacttcaggaaacataaagccaaggaaaatacttaaagatttaggtgtagac
gaattatcaaaccatcttttgagtgaaataaagaaaatatatgcagaacaaggtgttgac
atccacgataaacattttgaaattatcattagacaaatgatcaacaaagttgaggtaata
gatggcggagatacacattatatgcctggagatttagtaccatacaacagagttataaaa
attaatgaagagataaaaaataaaaattcatcagttgaaaaaaacagagaaatcgtaatt
ggtaaaaaattagcaaaaaaagtaattattgcttcggaaaacgatgacgaagaaagcaaa
atatacgaccagggaacaactataacagaagacataattaaagatataatagaagcaggt
atcaaagaaatagaagtatacgaagaatataaagaaattaaaactgaagacggtacaagc
caattggttggaacctctaaaaagtacctaatcaatcctaaaaatattattcgatttgaa
agaagacttttaagaataactaaagcttcactcgagagggaaggatggctctctgcagct
tctttccaacaaactgtacaaatattaactgaagctgcgatcgaaggaagagttgacaaa
cttaaaggattaaaagaaaacgtcatagttggtcaacctatcccagcaggtactggtcta
agtttatacacaaatcttaactatgaggttgtccaaccggaaaaagaggctgagattgct
actggtagagaaaaatctgtaggatga
DBGET
integrated database retrieval system
