KEGG   Desulfobacula toluolica: TOL2_C16460
Entry
TOL2_C16460       CDS       T02268                                 
Name
(GenBank) predicted ribonuclease J 1
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
dto  Desulfobacula toluolica
Pathway
dto03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dto00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TOL2_C16460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dto03019]
    TOL2_C16460
Messenger RNA biogenesis [BR:dto03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     TOL2_C16460
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6 Lactamase_B_3 eIF-1a
Other DBs
NCBI-ProteinID: CCK79808
UniProt: K0NIY5
LinkDB
Position
1934448..1936097
AA seq 549 aa
MLKIIPLGGLGEIGLNMMVIEYDDVIFIIDAGLMFPEEYMLGIDIVIPAMDYIRENRDKV
QAIIITHAHEDHIGALPYLLREIRLPVYGTAFTLGIVRNKLIEFDLNKYIDLNLVNPGET
LSIDPFEIEFIRVSHSTVEGVGLAIKTPEGVVVHTGDFRINHDSDKMKNTDISSFARFGE
EGVLALMSDSTNVEVEGYTMSEQEVAKNLEDLITVAKGRVIVALFASNVFRIQQLVDIAI
RNNRKVVFHGRSMEQIVAVATQLGHIHYPPNTILNIKQISRQEDDEVLIITTGSQGEPMS
ALVRMASGMHKHINIKKGDNVILSSKYIPGNEKAIANIINKLYRRGADVVYSKIAKIHTS
GHAHQEELKLMLNLTKPKYFIPIHGEYRHLVVHARLAEGLGLPRENVIVAEDGKIIAFDK
DGGRIEGSVHTGRILVDGKGIGDVGRSVLKERRELSEGGLVVVTMIIDEETGVVLYGPEL
ISKGFVFDSATGYLVDDAQCVILEIVEEIEAGFESRVELIRKKLKKALKQYFAFTINRRP
LIVPIIIEV
NT seq 1650 nt   +upstreamnt  +downstreamnt
atgcttaaaataattccactcggcggtcttggcgaaatcggtcttaacatgatggtgatt
gaatacgatgatgtcatatttatcattgatgccggtctgatgtttccggaagaatacatg
ctcggcattgatatcgttatcccggccatggattatataagagaaaatcgtgataaagta
caggccatcatcattacccatgcccatgaagatcatatcggggcgttgccttatctttta
agggaaatcaggctccctgtatatggcacagcctttaccctggggatcgtcaggaacaag
ctgattgagtttgatctcaataaatacattgatttgaatcttgtcaatcccggagaaacc
ctttcaattgatccttttgaaatagaatttatccgtgtcagccacagcacggttgagggt
gttggtcttgctattaaaacccctgaaggtgttgtggttcatacaggtgatttcaggatc
aatcatgattccgacaaaatgaaaaacacggatatttcaagttttgcaagatttggcgaa
gaaggtgtccttgcccttatgtcggattccaccaatgttgaggttgaaggttataccatg
tctgaacaggaagtggcaaaaaatcttgaagacttgatcactgttgccaaaggcagggtt
attgtcgccctgtttgcctcaaatgtgttcagaatacagcagctggtggatatagctatt
cgcaataatagaaaggttgtttttcatggtcggagcatggaacagatagttgccgtggcc
acacagcttgggcatatccattatcccccaaacaccattcttaatataaagcagattagc
agacaagaggatgacgaagttctcatcatcaccaccggcagtcagggagaaccaatgtct
gctttggtaaggatggcttcaggcatgcacaagcacattaatattaaaaaaggtgacaat
gtgattttgtcatccaaatacatcccgggaaatgaaaaggccattgcaaatattatcaat
aaactctaccgcagaggcgcggatgtggtgtattcaaaaattgcaaagattcatacctcg
ggacatgcccaccaggaagagctcaaattgatgttgaatctgaccaaacccaaatatttc
ataccgattcatggggaatatcgtcatttggtcgttcatgccaggcttgccgaaggactt
ggactgccaagagaaaatgtcattgttgccgaagacggcaaaatcattgcctttgataag
gacggcggcaggatagaaggcagtgttcatacaggtagaatccttgttgacggtaaaggt
ataggtgatgttggaagaagcgttttaaaggagaggagggaactttccgaaggcggcctt
gttgttgtcaccatgatcattgatgaagaaacaggtgttgttctttacgggccggagttg
atttcaaaaggatttgtttttgattcagccacaggataccttgttgatgatgcacagtgt
gttatacttgaaatcgttgaagagatagaagccgggtttgaatcccgtgttgagttgatc
agaaaaaaattaaaaaaagccttgaaacaatattttgcttttaccataaatcgcaggcct
ctaattgtgccaattatcattgaagtatga

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