Desulfobacula toluolica: TOL2_C16460
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Entry
TOL2_C16460 CDS
T02268
Name
(GenBank) predicted ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dto
Desulfobacula toluolica
Pathway
dto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TOL2_C16460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dto03019
]
TOL2_C16460
Messenger RNA biogenesis [BR:
dto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TOL2_C16460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Lactamase_B_3
eIF-1a
Motif
Other DBs
NCBI-ProteinID:
CCK79808
UniProt:
K0NIY5
LinkDB
All DBs
Position
1934448..1936097
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AA seq
549 aa
AA seq
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MLKIIPLGGLGEIGLNMMVIEYDDVIFIIDAGLMFPEEYMLGIDIVIPAMDYIRENRDKV
QAIIITHAHEDHIGALPYLLREIRLPVYGTAFTLGIVRNKLIEFDLNKYIDLNLVNPGET
LSIDPFEIEFIRVSHSTVEGVGLAIKTPEGVVVHTGDFRINHDSDKMKNTDISSFARFGE
EGVLALMSDSTNVEVEGYTMSEQEVAKNLEDLITVAKGRVIVALFASNVFRIQQLVDIAI
RNNRKVVFHGRSMEQIVAVATQLGHIHYPPNTILNIKQISRQEDDEVLIITTGSQGEPMS
ALVRMASGMHKHINIKKGDNVILSSKYIPGNEKAIANIINKLYRRGADVVYSKIAKIHTS
GHAHQEELKLMLNLTKPKYFIPIHGEYRHLVVHARLAEGLGLPRENVIVAEDGKIIAFDK
DGGRIEGSVHTGRILVDGKGIGDVGRSVLKERRELSEGGLVVVTMIIDEETGVVLYGPEL
ISKGFVFDSATGYLVDDAQCVILEIVEEIEAGFESRVELIRKKLKKALKQYFAFTINRRP
LIVPIIIEV
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaaataattccactcggcggtcttggcgaaatcggtcttaacatgatggtgatt
gaatacgatgatgtcatatttatcattgatgccggtctgatgtttccggaagaatacatg
ctcggcattgatatcgttatcccggccatggattatataagagaaaatcgtgataaagta
caggccatcatcattacccatgcccatgaagatcatatcggggcgttgccttatctttta
agggaaatcaggctccctgtatatggcacagcctttaccctggggatcgtcaggaacaag
ctgattgagtttgatctcaataaatacattgatttgaatcttgtcaatcccggagaaacc
ctttcaattgatccttttgaaatagaatttatccgtgtcagccacagcacggttgagggt
gttggtcttgctattaaaacccctgaaggtgttgtggttcatacaggtgatttcaggatc
aatcatgattccgacaaaatgaaaaacacggatatttcaagttttgcaagatttggcgaa
gaaggtgtccttgcccttatgtcggattccaccaatgttgaggttgaaggttataccatg
tctgaacaggaagtggcaaaaaatcttgaagacttgatcactgttgccaaaggcagggtt
attgtcgccctgtttgcctcaaatgtgttcagaatacagcagctggtggatatagctatt
cgcaataatagaaaggttgtttttcatggtcggagcatggaacagatagttgccgtggcc
acacagcttgggcatatccattatcccccaaacaccattcttaatataaagcagattagc
agacaagaggatgacgaagttctcatcatcaccaccggcagtcagggagaaccaatgtct
gctttggtaaggatggcttcaggcatgcacaagcacattaatattaaaaaaggtgacaat
gtgattttgtcatccaaatacatcccgggaaatgaaaaggccattgcaaatattatcaat
aaactctaccgcagaggcgcggatgtggtgtattcaaaaattgcaaagattcatacctcg
ggacatgcccaccaggaagagctcaaattgatgttgaatctgaccaaacccaaatatttc
ataccgattcatggggaatatcgtcatttggtcgttcatgccaggcttgccgaaggactt
ggactgccaagagaaaatgtcattgttgccgaagacggcaaaatcattgcctttgataag
gacggcggcaggatagaaggcagtgttcatacaggtagaatccttgttgacggtaaaggt
ataggtgatgttggaagaagcgttttaaaggagaggagggaactttccgaaggcggcctt
gttgttgtcaccatgatcattgatgaagaaacaggtgttgttctttacgggccggagttg
atttcaaaaggatttgtttttgattcagccacaggataccttgttgatgatgcacagtgt
gttatacttgaaatcgttgaagagatagaagccgggtttgaatcccgtgttgagttgatc
agaaaaaaattaaaaaaagccttgaaacaatattttgcttttaccataaatcgcaggcct
ctaattgtgccaattatcattgaagtatga
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