Desulfobacula toluolica: TOL2_C34880
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Entry
TOL2_C34880 CDS
T02268
Symbol
rpoB
Name
(GenBank) RpoB: DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dto
Desulfobacula toluolica
Pathway
dto03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dto00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TOL2_C34880 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dto03021
]
TOL2_C34880 (rpoB)
03400 DNA repair and recombination proteins [BR:
dto03400
]
TOL2_C34880 (rpoB)
Enzymes [BR:
dto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TOL2_C34880 (rpoB)
Transcription machinery [BR:
dto03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TOL2_C34880 (rpoB)
DNA repair and recombination proteins [BR:
dto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TOL2_C34880 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CCK81645
UniProt:
K0NLM1
LinkDB
All DBs
Position
complement(4073864..4077997)
Genome browser
AA seq
1377 aa
AA seq
DB search
MTGSLLTNKRIRKEFGSRRKIIDIPDLIGMQRNSYESFLQKDVLPEEREVKGLHAVFKSV
FPIKDFTDTSSLEYVSYSFGESKHSMKECTSRGMTYDIPVNIKVRLVVYDNDKDTGISTI
RDIKEQEIYFGTIPLMTRQGTFIVNGTERAVVSQLHRSSGVFFDHDKGKNYSTGKIIYNA
RIIPVRGSWIDMEIDAKDIVYIRIDRRRKFPVSILFKAFGYTSEDILDFFYNQEHIIKKD
GSFFKEFSQENLKRQRASFDIKSPKTGEIIVKKGRIFTKRALRQLADDGLDYIPISESEL
IGKAFAENIVDDETQEIILKAGDLIGEDSFEYMLEKQINDFNILYVDPRSSDSIRKTLVL
DKMEKKEEALMDIYRRLRPGNPATIEVAQDFVDHLFFRQAYYDLSKVGRLKMNHRLGVDT
KIDVKTLRKEDVLLTAATLVELKDTQGQVDDIDHLGNRRVRAVGELLENHYRIGLVRMER
AIKEKMSMQEVDAMMPHDLINPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSAL
GPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYRI
ASDGNASREIKHLTAFEEKDHPIGQANAPLDIDGNFLNPLVSSRVDGEFEMIENQDVKFM
DVSPNQLVSVSAALIPFLENDDANRALMGSNMQRQAVPLIKSEAPLVGTGMESVVARDSG
VTIVADYDGVVVEVDSKRIVVRNDDPDIQADNFEKVVSIYNCTKFVRSNQNTCFNHRPIV
EKGETVKKGQVIADGPSTEMGELALGKNVTVAFMPWDGYNYEDSILVSERLVKDAVYTSV
HVEEFEVLARDTKLGKEEITRDIPNVGEDALKNLDESGIIRLGAEVVSGDILVGKITPKG
ETQLSPEEKLLRAIFGEKAGDVKDTSLCVPPGVKGKVIDARVFSRRGLSKDDRTRLIEDN
EIEKLEKDRDDEIKIISSVAQEKVESILEGHDIISDLEKSGRVLVKSGTTVKLGLFADIP
MSVLVHVAVKDAVITEKAQVILESAQRQIKKARDHFNRQVSRFEKGDDLPPGVLKMIKIS
VAMERVLSVGDKMAGRHGNKGVVSRILRMEDLPYFEDGRPVDMVLNPLGVPSRMNVGQIL
EIHLGHAAFGLGQRIDEMLNQMKLDKLREKVIEIFSMTEAQKVNFKEDALAEKIKNFSDK
ELIDFACFYRNGVHMATPVFDGASEDEIKYLIDAAGFDKSGQSVLYDGRTGEPFDRPVTV
GTMYMLKLHHLVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAHAL
QEFLTVKSDDMTGRTRMYEKIVKGQNVLEPGMPESFRVLCKELNSLGLDMNLIEGKK
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaccggtagtcttttgacaaataagcgtattagaaaagagtttggcagcagaagaaaa
ataattgatattcctgatttgataggcatgcaacgaaattcttatgagagtttccttcaa
aaagatgttttgcctgaagaaagggaagtaaaaggactccatgctgtttttaaatctgtt
tttcctattaaggattttacagatacatcatcattggaatatgtttcgtattcctttggt
gaatcaaagcattccatgaaagaatgtacttcaagaggaatgacctatgatattccggtg
aatatcaaggtccggcttgttgtttatgacaatgacaaggacacggggatttcaacgatt
cgagatattaaggaacaagagatttattttggtaccatccccttgatgacccggcaggga
acctttattgttaatggaactgaaagagctgtcgtaagccagttacatcgttcctcaggt
gtatttttcgatcatgataaagggaaaaattattctacgggaaaaattatttataatgcc
cgaattattcctgtcagaggatcctggattgatatggaaattgatgccaaggatattgtt
tatataagaatagacaggcggcgaaaatttccagtgtctatcctttttaaggcctttggc
tataccagtgaagatattttggatttcttctataaccaagaacatattattaaaaaggat
ggatcgttttttaaagagttttcccaggaaaatctcaagcgccaaagagccagttttgat
atcaaatctccaaagacaggagagattatcgtcaaaaaaggaagaatctttacaaaacga
gcgttacgacagctggctgacgatgggcttgattatattcccatctcggaaagtgaattg
attggaaaagcttttgcagagaatattgttgacgatgaaacccaggagataattttaaag
gctggcgatctgattggcgaagacagctttgaatatatgctggaaaaacagatcaatgac
tttaatattctttatgttgatcccagaagttctgattccataaggaaaacccttgtttta
gacaaaatggagaaaaaagaagaagccttaatggatatctaccggcggcttcgacccgga
aatcctgcaaccattgaagttgcacaggattttgtcgatcatctttttttcaggcaggcg
tattacgacctgtcaaaagtaggacgtttgaaaatgaaccatcgtctaggtgttgatacc
aagattgatgtgaaaacattgcgaaaagaagatgtgctgctaacagcagcaactttggtt
gaactcaaagacacccagggccaggtcgatgatattgaccatctgggcaacaggcgtgtt
cgcgccgtgggcgagcttcttgaaaatcattatcgaatcgggcttgtcaggatggaaaga
gccatcaaggaaaaaatgagcatgcaggaagtggatgccatgatgccccatgatttgatt
aatccaaaacctgtttcagccgttgtcagggaattttttggtacttcccagctatcccaa
ttcatggatcagacaaatccgctgtctgaaacaactcataaaagacgattgtccgcgctt
ggaccaggtggtttgacacgagaaagagctggttttgaagtacgagacgttcatccgtct
cattatggaagaatttgtccgattgaaacgccggaaggaccgaatatcggattgatcgtt
tctttgtgtacctatgcaagggtcaatgattttggttttattgaaacgccttacaggatt
gccagtgacggaaatgcatccagggaaattaagcatttaacagcctttgaagaaaaggat
caccccattggacaggcaaatgcaccccttgacattgatggtaattttttaaatcctctg
gtttcttcacgggttgacggtgaatttgaaatgattgaaaatcaggatgtcaaattcatg
gatgtctcaccaaaccagctggtatccgtgtctgcggccctgatcccgtttctggagaat
gatgatgccaacagggcgttgatggggtctaatatgcagcgtcaggcagtgccgttgatt
aaaagtgaagcacctctggtcggtactggaatggaaagtgttgttgctcgtgattccggc
gttaccattgtagcggattatgacggtgtcgtagttgaggtggattcaaaacggattgtt
gtccgaaatgatgacccggatatccaggcagacaattttgagaaagtcgtatctatttat
aattgtacgaagtttgtccgttctaaccagaatacctgttttaatcacaggccgattgtt
gaaaaaggtgaaaccgtcaaaaaaggtcaggtgattgcagatggcccgtccacagaaatg
ggggaactggcccttgggaaaaatgtcacggtcgcatttatgccctgggacggatacaac
tatgaggactctatccttgtcagtgaacgtcttgtgaaagatgctgtttatacatctgtc
catgttgaagagtttgaggttcttgcccgcgatacaaaattaggtaaagaggaaatcacc
cgtgatattcccaatgtaggagaagatgccttaaaaaatcttgatgagagcggtattatt
cgcctgggtgccgaagttgtatccggtgatatccttgtgggtaaaattacaccaaaaggt
gaaactcaactttctccggaagaaaaattgcttcgggccatttttggtgaaaaagcagga
gatgttaaagacacttctctttgcgtaccacccggagtaaaaggtaaagtcattgatgca
agggttttctcacgaagggggctttcaaaagatgaccgtacacggctcattgaagacaat
gaaatagaaaaacttgaaaaagacagggatgatgaaattaaaatcatttcaagtgtggct
caggaaaaagttgaatccattcttgagggccatgatattatttctgatcttgaaaagtcg
ggaagggtactggttaaatccggcaccactgtaaaattagggctttttgctgatattccc
atgtctgtgctggttcatgttgccgttaaagatgcagtgattacggaaaaggcccaggtt
atattagagagtgcccaaaggcaaattaaaaaagccagggaccattttaaccgtcaggta
tcccgttttgaaaaaggggacgatcttccgcccggcgtactgaaaatgatcaaaataagc
gttgccatggaaagggttctttccgttggcgataaaatggctggtcgacatgggaacaaa
ggggttgtttctagaattttaaggatggaagatttaccttactttgaggatggcaggccg
gttgatatggttctcaatcccttgggggttccatcccgtatgaatgtgggccagatattg
gaaattcatttgggacatgctgcttttgggttggggcagcgcattgatgaaatgcttaac
caaatgaaactcgataaattaagggaaaaagtaattgaaattttttcaatgaccgaagcc
cagaaagtaaattttaaagaggatgcactggcggaaaaaattaaaaatttttctgataag
gaacttattgattttgcatgcttttacagaaacggtgtacacatggccactccggttttt
gacggggcaagtgaagatgagataaaatatctgattgatgccgccggatttgacaagtcc
ggtcaatccgtactatacgacggcagaaccggcgagccttttgacagaccggtaaccgtc
ggcaccatgtatatgcttaaactccaccatctggttgatgataaacttcatgctcgatcc
attggtccgtattccctggttacccagcagccactcggaggtaaagctcagtttggcgga
cagaggctgggtgaaatggaagtctgggcaatggaagcctatggcgctgcccatgcatta
caggaatttttgactgtcaagtccgatgatatgacaggaagaactcggatgtatgaaaaa
atagttaaaggccagaacgttcttgagcccgggatgcctgaatctttcagggttctttgc
aaagagctgaatagtctgggtttggatatgaatcttatagaaggaaaaaaataa
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