Desulfobacula toluolica: TOL2_C41890
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Entry
TOL2_C41890 CDS
T02268
Symbol
recB
Name
(GenBank) RecB: exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dto
Desulfobacula toluolica
Pathway
dto03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TOL2_C41890 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dto03400
]
TOL2_C41890 (recB)
Enzymes [BR:
dto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
TOL2_C41890 (recB)
DNA repair and recombination proteins [BR:
dto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TOL2_C41890 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
ResIII
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CCK82345
UniProt:
K0NNV1
LinkDB
All DBs
Position
complement(4953396..4957163)
Genome browser
AA seq
1255 aa
AA seq
DB search
MPEKLNPLTFPLHGTRLIEASAGTGKTYTIAALYLRLVLGHGKENGFFRPLIPPEILVVT
FTNAATEELRERIRNRLTEAAAFFRGQGDGDEFLENLKAEYDPDHLPGKARLLDQAALWM
DESAIHTIHAWCRRMLRQHAFDSLSLFDLELAPSDQDLMEEAACDFWRESFYPQSVETVA
LLKAVAAITTPQALLKQVSPIINAGIQVNADPFEVLENRRQSIEDARIIWASDFEEAVDR
VRKAQTDKTLNNNKYRKASLTGWITQMDLWVNKGGPLPDDQALEKFSAQGLANGVSKKKS
PPMHPAYDALDQMNERIDSLDVKQALVSHAAVRINNRITAAKTRLSRMGFNDLLSRLAQA
LSRPDSHLAEVIRCQFPVAMIDEFQDTDPVQYDSFGTIYLEQEQAGLFMIGDPKQAIYAF
RGADIHTYLAARKDTRGRHYTLEKNYRSTKGMVNAVNRMFGQASGFPDGAFLFKDEILFE
PVLARGRSEQLMVDGKEATPVTLWQMDQEGPVVKTGPDGYLTRMADAAAGRIVRLLNLGG
QTPCRAGFQTEDGRITPLCPSDMAVLVRDGMEARAVRAALEKRRVRSVYLSDRESVFDTQ
EAVCLLYLLQACMEPSNERMLRTALATPVLDLPLKLLDKLNRDEIAWEAELVRFKLFQKI
WRNQGVLPMVRALLLEFNVGARLLSTPSGERQLTNLLHLAELLQTAAATLDGEQALIRWL
AGQIEQSAGGVDDEILRLESDRDLVRVVTIHKSKGLEYPLVFLPFICSFRNLTARNTPMV
KIHDDKGNFRLEVNPGEEELELADKERLAEDLRMLYVALTRSCFACWLGIGVMGKTTKKS
GETTTLHQSGMGYLLSGGRMVQTAELSSILTDFKADCLDMTIEPLPVPSLNVFQPGPEPP
DLSQAAVFEGIIPRNWRITSYSGILSGAAMPRQEKHFADYLNEVNEANQANQANQANEEI
DSPDSAAQDQLLEGETQINLAPRIMADARSIHCFPRGPEPGTFLHDILEWAATHGFDRVA
QDRTVILKRIAMLCARRGWDGWAEVLTDWLMEFVTVVLPLPDSPMRLSDLVLNNCRAEME
FMFAAHDVDVCVLDSLVTNNILQGRVRPLLQENLVNGMLKGFIDLVFCFQGRYFVLDYKS
NHLGETQDAYGTEAMAHAMLEHRYDLQYVLYTLALHRLLKARLNNYDYDRDVGGVVYLFL
RGVTASGQGLYADKPSKKLITILDILFQKDELLKKGELLQENELFQEGDSHDTDC
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaaaattaaatcccctgacctttccccttcacggcacccggctcattgaggcc
agtgctggaacgggcaagacttacaccattgcggctctttacctgcgtcttgttctgggg
cacggcaaagagaacggtttttttcgccccttgattccgccggaaatactggtggtcact
tttaccaatgcagcaactgaagaactcagagagaggatcagaaatcgccttaccgaggct
gcggcttttttccgggggcagggtgatggagatgaattcctggaaaatcttaaagccgaa
tacgatcccgaccacctgccgggcaaggcacgtctgcttgaccaggccgctttatggatg
gatgaatcagccatccataccattcatgcctggtgtaggcgcatgcttcgccagcacgct
tttgacagtctctcgctttttgatttggagcttgcacccagcgaccaggatttgatggag
gaggcagcctgcgatttctggcgtgaaagcttttatccccaaagtgtggagacagtggca
ttgttaaaggctgttgctgcaatcaccaccccccaggccctgttgaaacaggtttcaccc
attatcaatgcaggaatacaagtcaatgccgatccgtttgaggtgttggaaaaccgcagg
caatcaattgaagatgcccgcattatatgggcgtcagactttgaagaagctgttgaccgg
gtgcgcaaggcccagacagacaaaaccctgaacaacaacaagtacagaaaagcatcactg
acaggctggataacccagatggatctgtgggtcaacaaaggcggcccgttgccggacgat
caggccctggaaaaattttcagcgcagggccttgccaacggggtgtcaaaaaaaaagagt
cctcccatgcaccctgcttatgacgctcttgatcaaatgaatgaacgtattgattctctt
gatgtcaaacaagctcttgtgtctcatgccgcagtccggatcaacaatcgtatcacagcg
gcaaaaaccaggctttccagaatggggttcaacgatcttttaagccgtctggcgcaggct
ttgtccaggccggacagccatctggccgaagtaatccgttgccagtttcccgtggccatg
atcgacgagttccaggacactgatcctgtgcaatatgactcttttggcaccatctatctg
gaacaggaacaggcaggcctgtttatgatcggagaccccaaacaggcgatctatgccttc
aggggagccgacattcacacatatcttgcggccagaaaagacacacgggggcgtcactac
accctggagaaaaattaccggtccacaaaaggcatggtgaatgccgttaaccggatgttt
ggccaagcttccgggtttcccgacggagcgtttttatttaaagatgaaatcttgtttgaa
ccggtacttgcccgtggaagatccgagcagttgatggtggatggaaaagaggccactcct
gtgaccctgtggcagatggaccaggaagggcccgttgtcaagaccggccctgacggctat
cttacacggatggcagatgctgcggcaggcaggatcgtccggctgttgaatctgggggga
cagactccctgccgcgcagggtttcaaacagaagatgggcggatcacacctctttgcccc
tcggacatggctgttcttgtaagagacggcatggaagcccgtgctgttcgcgctgccctt
gaaaaaaggcgggtcagatcggtctatctttcggatagggaatccgtgtttgacactcag
gaggctgtttgtctgctgtatcttctccaggcctgcatggagccttccaacgagcggatg
ttgagaactgccctggcaacacctgttctggatctgcctcttaaactgctggacaaatta
aaccgcgatgaaattgcctgggaagccgaacttgtacggtttaagctatttcagaaaatc
tggcgcaaccagggagtgctgccaatggtacgcgccctgcttcttgaattcaatgtgggg
gcccgccttttgtcaacaccctcaggagaacggcaactgactaatctgctgcatcttgcc
gaactgctccagacagcggccgcaaccctggacggagagcaggcactgatccggtggctg
gcagggcagattgagcagtctgcaggcggtgttgacgatgaaattctgcgccttgaaagc
gaccgggacctggtaagggtggtgaccatacacaaatcaaagggtcttgagtaccctctg
gtgtttttgccttttatttgcagcttccgcaaccttacagcccgcaacacgcccatggtt
aagatccatgatgacaaaggcaatttccggctggaggtgaatccgggagaagaagaactt
gaactggcagataaggaaaggctggcagaggatcttcgcatgctttatgttgccctgacc
cgatcctgctttgcctgctggctgggcattggggtgatgggaaaaacaaccaaaaaatcc
ggggagaccacaacccttcaccagtcgggcatgggatacctgctttccgggggcaggatg
gttcagacagccgaactttcttcaatcctgactgatttcaaggcggattgtcttgacatg
actattgaaccgctgcctgtgccttccctaaatgtttttcagcccggcccggaaccaccc
gacctgtcccaggcagctgtttttgaaggtatcattccccgtaattggcgaattacaagt
tattctggaatcttgtccggtgctgccatgccccgacaggaaaaacattttgccgactat
ttaaatgaggtaaacgaggcaaatcaggcaaatcaggcaaatcaggcaaatgaagaaatt
gattccccggacagtgcggcccaggatcagcttctggaaggagaaacacaaataaatctt
gcaccccggatcatggctgatgcccgctccatccattgttttccaagaggccctgagccg
ggaacgtttcttcacgatattttggaatgggctgcaacccatggatttgacagggtcgca
caggatcggacagtcatcctcaagcggattgcaatgctttgtgcgcggcggggatgggac
ggctgggcagaagttctgaccgactggctcatggaatttgtcaccgtggtgctgcccctg
ccggacagtcccatgcggctgtcagaccttgtcttgaacaattgcagagccgagatggag
ttcatgtttgcagctcatgatgtggatgtgtgtgtgctggacagcctggttacaaacaat
attctgcagggaagggtgaggcccctgttgcaggagaatcttgtcaacggcatgctcaag
ggatttattgatcttgttttctgttttcaggggcgctattttgtactggattacaagtcc
aaccacctgggcgaaacccaggacgcttatggaacagaggccatggcacatgccatgctg
gaacatcgatatgatcttcaatatgtgctgtataccctggccctgcaccgccttctcaag
gcaaggctgaacaattatgactatgaccgtgacgtgggcggggtggtctatctttttttg
cggggggttacggcttccggccagggcctgtatgctgacaaaccctcaaaaaagctgatc
accatcctggatatattattccaaaaagacgaattgttaaaaaaaggcgaactgttacaa
gaaaatgagctgtttcaagaaggagattcccatgatactgactgttga
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