Desulfobacula toluolica: TOL2_C42930
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Entry
TOL2_C42930 CDS
T02268
Name
(GenBank) predicted ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dto
Desulfobacula toluolica
Pathway
dto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TOL2_C42930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dto03019
]
TOL2_C42930
Enzymes [BR:
dto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TOL2_C42930
Messenger RNA biogenesis [BR:
dto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TOL2_C42930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Utp25_C
AAA_19
NAT10_TcmA_helicase
Npun_R1517
Motif
Other DBs
NCBI-ProteinID:
CCK82449
UniProt:
K0NCZ1
LinkDB
All DBs
Position
5083178..5084413
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AA seq
411 aa
AA seq
DB search
MKFETYHISSAIKRNLSDLGFKRPTDIQYKAIPSIMKGEDVLAIAQTGTGKTAAFAIPII
DNIHRAKSSRRSWGIKCIIMVPTRELAAQIGNVFDELSKHTKVKAYAVYGGVEQDPQIKK
LGNGIDVLVATPGRMFDLISQGAISLKHVDTLVLDEADQMLDLGFIKDISAVKKKLIQRH
QTLFFSATINKEIKKLAFSQVKSSAIRIQISPDDPVSKNVSHFVIFVEMDDKRFFLRRFV
HDNPKTKIIVFVRTRVRAERVAKALERDNITSATLHGEKDQKDRTSVMNLFKQGGINILI
ATDVSARGIDIPDVKYVINYDLPEKSENYVHRVGRTGRGVKKGIAISFCSTEEKERLDAI
QQFLSKPIETISMGKKDYAETLKVSRERQSIKELIAEQEEWEKNKKKRKKK
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaaacataccatatatcctcagccataaagagaaatttgtccgatctcgga
tttaaacgtcccacagatatccagtacaaagccattccttccatcatgaaaggagaagat
gtactggcaattgcccagaccggcacggggaaaacagcggcatttgccattcccataatt
gacaacatccacagggcaaaaagctccaggcgatcctggggaatcaaatgcattatcatg
gtgcccacaagggaactggccgcccagatcggcaatgtatttgatgaactttcaaaacac
accaaggtaaaagcatatgctgtttacggcggggttgagcaggacccccagatcaaaaag
cttggcaatggaatagacgtgcttgtggcaacgccaggacgcatgtttgacttgatcagc
cagggggcgatcagtctgaaacatgtggatacacttgtccttgatgaagccgaccagatg
ctggaccttggatttataaaggatatcagcgcagtcaaaaaaaagcttattcagcggcac
cagaccctgtttttttccgccaccattaataaagagataaaaaaacttgccttttcccag
gtaaaatcgtctgccatccgaattcaaatttccccggatgatccggtctctaaaaatgta
tcccattttgttatatttgttgaaatggatgataaacggtttttcttgcgaagatttgtt
catgacaatccaaaaactaaaatcattgtttttgtcagaaccagagtcagggccgaaagg
gtggccaaagcccttgaaagggacaatataacatctgcaacccttcacggagaaaaagac
cagaaagacagaaccagtgtaatgaacctgttcaagcagggcggcataaacatcctgatc
gccacggatgtcagtgccaggggcattgatatccccgatgttaagtatgtcatcaactat
gaccttcctgaaaaaagtgaaaattatgtccacagggtgggaagaaccggcagaggcgtt
aaaaaaggcattgccatctccttttgcagcacggaagaaaaagaacgcctggatgccatt
cagcagtttttaagcaaaccaatagaaaccatttccatgggcaaaaaagattatgccgaa
acactcaaagtctccagagaaagacaaagcatcaaggagttgatcgcggaacaagaagag
tgggaaaaaaacaagaaaaaacgaaagaaaaaataa
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