Dissulfurispira thermophila: JZK55_01990
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Entry
JZK55_01990 CDS
T07039
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dtp
Dissulfurispira thermophila
Pathway
dtp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JZK55_01990 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtp03400
]
JZK55_01990 (mfd)
Enzymes [BR:
dtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JZK55_01990 (mfd)
DNA repair and recombination proteins [BR:
dtp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JZK55_01990 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
IstB_IS21
Cas3-like_C_2
UB2H
MFD_D3
RecG_dom3_C
AAA_22
nSTAND3
TniB
Motif
Other DBs
NCBI-ProteinID:
BCB95277
UniProt:
A0A7G1H0T2
LinkDB
All DBs
Position
complement(196753..200034)
Genome browser
AA seq
1093 aa
AA seq
DB search
MPSVFHILKTNAEQLDRQLNNSKTKRIYNISIPHLAICLSFYKNPFIIIEDSDESALRLY
NDLLFFSSLVTKKQQSEYPKSIATFGGGEIIYFPPSSSTNAIGERAKAIYKIASSQQTLS
PPYVITSKDALMTGFHISDIENNVLTIAKGLEIKRESLQTWLTSHGYRNVSVVIEQGEYS
RREWLFDIYPISENSPLRVEFFGDEIDLIRTFDIETQRSIKEINNIKIFPAEEGEPIHNL
IHQFTPSPPHLFTTSPLHHSTHSHIHHVYISHLPFIGEGIDSGEMTISGMGILPEERKAI
NKIADAISKIDKQIVFVMSSNAQAERLKEIMHDEGVVMPIIEGHQLCSYEGRFCIVTGKL
SCGINLPNILILTDKEIFGERPSYRPIRKSKASRVLISIDDLKIGDFVVHKDHGIGRFVN
LQRQKIGVQKKSSDFLGQELEGKDDYEQDLITIEYANGKLYVPLHNINKIQKYSAMEGHT
PSLDKLGGKTWQRTKQKVKKGIHEMAEKLLRLYAERKIIRGYKFSEDTPMHREFDDFFPY
EETPDQIKSIEEIKKHLHSETPMDMLLCGDVGYGKTEIAMRAAFRAVYDGYQVAVLVPTT
LLAEQHFRTFKARFSGFPIKIDCLSRFKSKADLKTSLTAISKGEIDIVIGTHILLNKDVQ
FHNLGLLIIDEEHRFGVAQKERLKDLKKGVDVLTLTATPIPRTLHMSLSGIREMCIIETP
PEERLAVRSIVTTFNDMTIKEAIQRELQRQGQVFFVHNRIKDIEKIAAYIKKLIPDAKVA
IAHGQMRELELEKIMLGFLNRETDVLVCTAIIGAGLDIVTANTIIINRADTFGLSDLYQL
RGRVGRGNTQAYAYFLIPGEDVITDDAKKRLQSIQEMSYLGAGFRLAMRDLEIRGAGNLL
GREQSGHIYRVGFDMYMEMLEKTVSELKGEEIKEEVDTQIKIRISAFIPDDYISDITLRL
SIYRRISALKSLDELSRLRDEIIDRFGKPPEEVNNLLHIMKIKILSRLLYISSVSDLDGK
YRFSFVSDTENKYKIPEDFFDRLLKILFEMQKKEKKIRFLPDGFELNMQDVLLNERIEKV
EDMLQVLWTRLSK
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgccgagtgtattccatatattaaaaaccaatgcagaacaattagacaggcaattgaat
aatagcaagacaaaaaggatttacaatatttctatcccccatcttgcaatatgcctctca
ttctataaaaatccattcatcataattgaagactctgatgagtctgcattgaggctttat
aatgaccttttatttttcagttcgttggtcaccaaaaagcagcaatcggagtacccaaaa
agcattgcgacttttgggggtggagaaatcatttatttcccgccatcatccagcacaaat
gccataggagaaagggcaaaggcaatatataaaatagccagtagtcagcaaacgctatct
ccgccttatgtaatcacatccaaagatgcccttatgacaggttttcacatttctgatata
gaaaataatgtcttgaccattgcaaagggattagaaatcaaaagagaaagtcttcagaca
tggcttacatcacatggttacaggaatgtaagtgttgtaatagaacaaggtgaatacagt
cgtagagagtggctctttgacatctatcctatatcagaaaactcacctttgagagtagag
ttttttggcgatgaaatagatctgataaggacttttgacatcgagacacagcgatcaata
aaagagataaataacataaaaatctttccagcagaggaaggagaaccaatacataatttg
attcaccaattcaccccttcaccccctcacctattcaccacctcaccgcttcaccactcc
acacattcacacattcaccatgtctatatctcacatctgccatttattggagaagggatt
gactcaggtgaaatgacaataagtggaatgggtattcttcctgaagaaagaaaggctata
aacaaaatcgcagatgcaatttcaaagatagataaacagatagtttttgtgatgtcatca
aatgctcaggcagagcgtcttaaagaaatcatgcatgacgaaggtgttgtgatgcctata
atagaagggcatcaactatgttcttatgaaggtaggttttgcattgtaacaggcaaattg
tcttgtggcataaatctgcctaatatcctgatactcacagataaagagattttcggcgaa
agaccgtcttacaggcctattagaaaatcaaaggcatcgagggtgcttatcagcattgat
gatttgaagataggagactttgttgtgcataaagaccacggcattggaagatttgtcaat
ttgcaaagacaaaaaattggggtccaaaaaaaatcgtcagattttttggggcaagagtta
gagggcaaagatgactatgagcaggatttaataacaatcgaatatgcaaatggcaaatta
tatgttcccttacacaatattaataaaatacaaaaatacagtgctatggagggacacacc
ccaagccttgataaacttggtggcaagacatggcagaggacaaaacaaaaagtaaaaaaa
ggcattcatgagatggcagaaaaactcctcagactatatgctgaaagaaaaattataaga
ggctataaattcagtgaggatacgccaatgcacagggaatttgatgacttcttcccatat
gaagagacccctgatcagataaaatccatagaagaaattaaaaaacacctccattcagaa
acaccaatggatatgcttctgtgtggagatgttggttatggaaagacagagattgcaatg
cgggctgcatttagggctgtatatgacgggtatcaggtggctgtgctcgtgccaactaca
ttacttgcagaacagcatttcaggacattcaaggcacgattttctggatttcccatcaag
atagattgtttgagtagattcaagagcaaagctgatctaaaaacctctctaacagcaatc
tcaaaaggagaaatagacatagttataggaacacacatccttttgaataaagatgttcag
tttcataatcttggccttctaattatagatgaagaacacagattcggggttgcccaaaag
gaaagattaaaagacctcaaaaaaggggtcgatgtccttacacttacagcaacaccaatt
ccgaggactctgcacatgtctctatcagggataagagagatgtgcatcatagagacaccg
ccagaagagagactcgctgtgagaagcattgttacaacattcaatgacatgacaataaaa
gaagcaatacaaagggaattgcaaagacagggacaggtcttttttgttcacaataggata
aaagatatagaaaaaatagctgcatatatcaaaaaactcatacctgatgcaaaggtggca
atagctcatggtcagatgagggaattagaactcgaaaagattatgctcggatttctgaat
agggaaacagatgtgttagtatgcacagcaataattggcgcaggtcttgatattgtaaca
gctaacacgatcatcatcaacagggcagatacctttggattgtctgatctttatcagtta
agaggaagggtgggaagaggcaatacccaggcatatgcatatttcttgatacccggagaa
gatgttatcactgatgatgcaaaaaaaagacttcagtcaatacaggagatgagttattta
ggtgcaggctttagacttgcaatgagagacctcgaaataagaggcgcaggaaatctcctc
ggcagagaacagtcaggacatatttacagggtcgggtttgacatgtatatggagatgctc
gaaaaaacagtctctgaactcaaaggagaagaaataaaagaggaagtagatacacagata
aaaataaggatctctgcctttatacctgatgattatatatctgacatcacactaaggctg
agtatttatagaagaatatcagctctgaaatccctcgatgaactgtcaaggttaagagac
gaaattattgacagatttggcaaaccacctgaagaggtgaataatcttttgcatattatg
aaaataaagatactgtcaaggctgttatacatttcatcagtctctgatttagatggtaag
tatagattttcattcgtctcagacacagaaaataaatacaagataccagaagattttttt
gataggctattgaaaatattattcgagatgcagaagaaagagaagaaaattcgttttctg
cctgatggctttgaattaaatatgcaagatgtattactcaatgaaagaatagaaaaggtt
gaagatatgcttcaggtgttatggacaagattgtcaaaataa
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integrated database retrieval system
