Dissulfurispira thermophila: JZK55_06450
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Entry
JZK55_06450 CDS
T07039
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dtp
Dissulfurispira thermophila
Pathway
dtp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dtp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JZK55_06450 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtp03021
]
JZK55_06450 (rpoB)
03400 DNA repair and recombination proteins [BR:
dtp03400
]
JZK55_06450 (rpoB)
Enzymes [BR:
dtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JZK55_06450 (rpoB)
Transcription machinery [BR:
dtp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JZK55_06450 (rpoB)
DNA repair and recombination proteins [BR:
dtp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JZK55_06450 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF2118
SAP
SAB
Motif
Other DBs
NCBI-ProteinID:
BCB95723
UniProt:
A0A7G1H0Q8
LinkDB
All DBs
Position
643998..647936
Genome browser
AA seq
1312 aa
AA seq
DB search
MAKLLRERLNFGKVPPVLDVPYLVEFQRKSFDRFLQKDVAHDKRIEEGLQSAFNSVFPIT
DYNDTASIEFISYNLGEPKITPRECLLKGLNYSAPLKIKVRLNIYEKNEKGNKILKESKE
QEVYIGDIPIMTETGSFIINGVERVIVSQLHRSPGVYFAPDKGKTHASGRLLYTARVIPV
RGSWLDFEFDAKDILYVRIDRRKKLPATIVLKALGYSNEDLLKTFYPIEEIRIKDKEHYT
RAVSDVLAGIRTRHNIVSPDNKEIIVKEGSKITKMALKKMEAVGIKEIPITRTDIIGRVT
LKDIVDPSTGEIIVDGNKEITEDAFHKILSLKIDTLHLLFIDNVSYLPSFRETLLTDRVA
TQEDALKEIYKKLRPGEPATVAASRELFSGLFFDPKRYDLSPVGRLKINEKLGLDIPLDV
RVLTDKDIVEIVRYLLNLRTGKGEVDDIDHLGNRRIRGIGELLENQFRIGLVRMERAVKE
KMTLTELDTAMPHDLINAKPVMAAIKEFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGG
LTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLITSLASYAKINDFGFIEAPYRKVEGG
RVTGEIVYLSAIESERYIIAEATSPMDKKGNLIGEAVSARVGGDFKMVSPEDVQYMDVSP
KQIVGVSASLIPFLENDDANRALMGSNMQRQAVPLLKPDAPIVGTGMEHVAARDSGWLSI
AKRAGIVESVDASRIVVRVTESGGGVDIYNLVKFQRSNQGTCMNQKPIVNVGDKVERGDI
LADGPSTDMGELALGKNVIVAFMPWGGYNFEDAILLSERLVKDDIYTSIHIEEFDVEARD
TKLGPEEITRDIPNVGEEALKDLDESGIIRIGAEVKAGDILVGKVTPKGETMLTPEEKLL
RAIFGEKAEEVKESCLYVPPGIEGTVVDVRILSRKGMEKDERTKSIEQDSINELKRDLEE
EIKILKEDKAARIRKLLIGQKVAEDVKDSKTREVVCPKGKKLTEAHLSRVKDDYLLKIRV
DDADVRDKLEKINIETNQYIKYLETQYNERVERVKKGDELLPGVNKVVKVFIAMKRKIQM
GDKMAGRHGNKGVVSMILPEEDMPYLPDGTPIDIVLNPLGVPSRMNVGQILETHLGWAAM
SLGLHVSTPVFEGAKEKEIKDLLKKAGLPTSGQMTLYDGRTGEPFQRPVTVGCMYMLKLH
HLVADKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAHTLQEFLTVKSD
DISGRSRMYEAIVKGDPVLEPGVPESFHVLIKELQSLGLDVELLEKKRTQGG
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcttttaagggaaagattaaatttcggcaaggtgccgcctgtattggatgtg
ccgtatcttgttgaatttcagaggaaatcatttgacagattcttacagaaagatgttgct
catgacaaaaggatagaagaggggttgcagtctgcttttaatagtgtttttcctataact
gattacaatgatactgcttccatagaatttatttcatataatcttggtgagccaaagata
acgccgagggagtgtcttctcaaaggactgaattattctgcaccgcttaaaataaaggtg
aggcttaatatttacgaaaaaaatgaaaaaggcaacaagatactgaaggagtcaaaagaa
caagaggtttatataggcgatatccctattatgacagaaacagggagttttattataaat
ggagtagagagggtaattgtcagtcagttgcacaggtcccctggggtgtattttgccccg
gataaaggcaagactcatgcaagcggaaggcttctatacacagcgagggtgattcctgtc
agaggttcatggcttgattttgaatttgatgcaaaggatatcctctatgtgaggattgat
agacgcaagaaactgcctgcaactatagtgcttaaagcgctcggttactcaaacgaagat
ttactcaagactttttatcctattgaggagataaggataaaggataaagagcattataca
agggcggtgagcgatgtccttgctggcatcaggacgaggcataatatagtttctcctgac
aacaaggagattattgtaaaagaaggcagcaagataacgaagatggcattaaagaagatg
gaggctgtaggaataaaggaaatacctataacaaggactgacattattggcagagtcacg
ctcaaggatattgttgacccgtctacaggagagataatagttgatggtaataaggaaatc
acagaggatgcttttcataagatcctctctcttaaaatagatacgctgcatctgcttttc
atagataatgtgagttatcttccgtcgtttagagagacacttcttactgatagggttgca
acacaggaagatgcattaaaagagatttataagaaactcaggcctggtgagcctgcaact
gttgctgcatcgcgtgagctcttttcagggttgttttttgatcctaaaaggtatgacttg
tcccctgtaggaaggttgaagataaatgaaaaacttggtcttgatattcccctcgatgtc
agggtattgactgataaagacattgtggagattgtgcgatatcttttaaatctcaggaca
ggcaaaggagaggtggatgatatagaccatctcggaaacagaaggataagaggtataggc
gaactgctcgaaaatcagtttagaatagggcttgtgcgtatggaaagagctgtaaaggag
aagatgacccttacagaacttgacacagcaatgcctcatgacttgataaatgcaaagcca
gttatggctgctatcaaagaattttttggatcaagtcaattgagtcagtttatggaccag
acaaatccgctgtcagagataacacataaaaggaggttgtcagcccttggtcccggcggc
cttacaagggagcgggcaggatttgaggttagagatgtgcatccaacacattacggaagg
atatgtcctatagaaactccagaaggtccaaatatcgggcttatcacatctcttgcatca
tatgcgaaaatcaatgactttggttttatagaagctccttacaggaaggtcgaaggaggc
cgtgttacaggtgagatagtatatttatccgcgatagaaagtgaaaggtatattattgct
gaggctacttctccgatggataaaaagggaaatcttattggcgaggctgtttcagcaaga
gtgggaggagattttaaaatggtctctcctgaagatgttcagtacatggatgtatcgcct
aaacagatagttggtgtctctgcatcattaatcccatttttagaaaatgatgatgcaaat
agggcattgatggggtctaacatgcagaggcaggctgttccactcttaaagcctgatgcg
cctattgttggaaccggcatggagcatgttgctgcaagggattctggctggttgagcatt
gcaaaaagggcgggtattgttgagagtgttgatgcatcaagaattgtggtaagagtaaca
gagagtggaggcggagttgatatatataaccttgtcaaatttcaacgatcaaatcagggt
acatgtatgaatcagaaaccaattgttaatgtaggagacaaggtcgaaagaggcgatata
ctggctgatggtccctctactgatatgggtgaattggcacttggtaaaaatgttatagtt
gcctttatgccgtggggaggctataactttgaggatgcaatccttctgagtgaaaggctt
gtgaaagatgatatatatacctctattcacatagaagaattcgatgtagaggcaagagat
acaaaactcggacctgaggagatcacaagggatattcctaatgttggtgaagaggctttg
aaagacctcgatgagagcggcataataagaatcggcgctgaggttaaggcaggtgatatc
ctcgttggaaaagttacaccaaaaggcgagacaatgcttactccagaggagaagctcctc
cgtgcaatatttggagaaaaagcagaagaggtaaaagagagttgcctctatgtccccccc
ggaattgaaggcactgtcgttgatgtaaggatactgtcaagaaagggaatggaaaaagat
gagaggacaaagagtatagaacaagacagtataaacgaactcaagagagatttggaagaa
gagataaaaatcttaaaggaagacaaggctgcaaggataaggaaactgttgatagggcag
aaagtagcagaagatgtaaaggattctaagacaagagaggttgtatgtcctaaaggtaag
aagcttacagaggctcacttgagtagggttaaagacgactaccttttgaagataagggtt
gatgatgcagatgtcagggataaattagagaaaataaacatagagacaaatcaatacatc
aaatatctcgaaacgcaatataacgaaagggtagaaagagtaaaaaagggagatgagctc
ttgcccggagtaaacaaggttgtgaaggtgtttattgctatgaaaagaaagatacagatg
ggagataagatggcaggacgacacggaaacaaaggtgttgtctctatgattctgcccgag
gaggacatgccttatttgcctgacggaacacctattgatatagtgctgaatccactcggc
gttccttcaagaatgaatgtcggacagatactcgagacccatctcggctgggctgctatg
tcacttggattgcatgtatcaacacctgtatttgaaggagcaaaagaaaaagagattaag
gaccttctaaaaaaggcaggacttccgacatcagggcaaatgaccctttatgacggaagg
acaggtgagccatttcaacgacctgtgactgttggttgtatgtatatgcttaaactgcat
catcttgttgctgataaaatccatgcacgatctattggtccttactctcttgttacacag
cagcctcttggtggaaaggcacagttcggagggcagaggctcggagagatggaggtctgg
gcattggaggcatatggtgcagcccatacactgcaggaattcctgacagtaaagagcgat
gatataagtggaagatctcgtatgtatgaggcaattgtgaaaggagacccagtgcttgag
cctggtgttcccgaatcatttcatgtattaataaaagaactccagagtcttggtcttgat
gtagaacttctggagaaaaagagaacacagggaggatag
DBGET
integrated database retrieval system
