Dissulfurispira thermophila: JZK55_06460
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Entry
JZK55_06460 CDS
T07039
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dtp
Dissulfurispira thermophila
Pathway
dtp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dtp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JZK55_06460 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtp03021
]
JZK55_06460 (rpoC)
03400 DNA repair and recombination proteins [BR:
dtp03400
]
JZK55_06460 (rpoC)
Enzymes [BR:
dtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JZK55_06460 (rpoC)
Transcription machinery [BR:
dtp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JZK55_06460 (rpoC)
DNA repair and recombination proteins [BR:
dtp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JZK55_06460 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
BcrAD_BadFG
Motif
Other DBs
NCBI-ProteinID:
BCB95724
UniProt:
A0A7G1GZC2
LinkDB
All DBs
Position
647938..652047
Genome browser
AA seq
1369 aa
AA seq
DB search
MIEDIYALFQRPKNPKDFDAIRIKLASPEKIREWSYGEVKKPETINYRTFKPEHDGLFCA
KIFGPVKDWECLCGKYKRMKHRGVICDKCGVEVIQSKVRRERMGHIELATPVAHVWFLRG
VPSRIGTLLDMTIRQLERVLYFEEYIVIDPGDTPLKEKELLSEDEYKKKLSEFGSRFKAG
MGAEAIRELLKKVDLETLAKDLKEKIDAVSSLGIKRKLTKRLKIVEAFIKSENRPEWMIL
DIIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMDLKAPSVIIKNEKRML
QEAVDALFDNSKKAKVLKAGGKRALKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELQLNQCGLPKRMALELFKPFVFNKLEEKGYATTIKQAKRLVEKETPEVWDALEDVIREH
PVLLNRAPTLHRLGIQAFDPIIVEGKAIKLHPLVCTAFNADFDGDQMAVHVPLSIEAQIE
ARVLMLSVNNLLSPANGKPIVVPTQDMVLGIYYLTKQKNGAKGEGKIFADIEDVRSAYDS
NIVEEHARIKVRMNGELVETTVGRVLLSEILPHSVPFSMVNKELTKKELGKLIEYIHKTL
GKRETVVFLNNLERLGFGYATKSGISICIDDMHVPTKKAELIKEAEQEVMEVQRQYADGL
ITQGERYNKVIDIWANVTERVAEEMMKELGAEDGKPLSDEELKERRTFNNIFMMADSGAR
GSTAQIRQLAGMRGLMAKPSGEIIETPITANFREGLTPLQYFISTHGARKGLADTALKTA
NAGYLTRRLVDVAQDVILTEDDCGTREGIVVTALIEGGEIIQPLEDRIFGRTLAESLKDP
ITNEIIANRNQEIDDELAKKIVDAGIDRVKIRSVLTCNSRSGVCAKCYGRDLARGDAIEI
GEAIGIIAAQSIGEPGTQLTMRTFHIGGAATKVIEQATLEPKNSGYVKFIDLNAVKNKEG
VLIVLNRNAMIAIVDKSGREKEKYNLVYGARIFAEDGQKIEAGQRLVEWDPYSTPILTEI
GGRIALGDIVEGVTVKEEVDETTGLAHKVIIDYPANMRPRVSIKDEHGRTAKIPGTNNPA
RYLLPSGAHLLVDKGDVVMPGDILAKIPRETTKTKDITGGLPRVAELFEARRPKEQAIVT
EIDGIVEFRGAHKGMRVVVVKGGEDSREYLIPKGKHVTVHEGDWVKAGEPLMDGAVNPHS
ILDILGPKELQRYLVDEVQKVYRLQGVSINDKHIEVIVRQMMRKVRIEDPGDTTFLIGDE
IDRITFIEENERVRAEGGKAARGRPMLLGITKASLATESWVSAASFQETTRVLTEAALSG
AVDELKGLKENVIMGRIIPAGTGMPSYRETFIKGDFYSMQLEHEEVETE
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
ttgatagaagacatttatgccctttttcagaggcctaagaatccaaaggattttgatgca
ataaggataaagcttgcatcacccgaaaagataagggaatggtcatacggtgaggtaaaa
aagcctgaaacaataaattatcgcacattcaagcctgaacacgatggacttttctgtgca
aagatattcggtcctgtcaaagactgggagtgtctttgcggaaagtacaagagaatgaag
cacaggggtgtaatatgcgataaatgcggtgtcgaggtaatccagtcaaaggtaagaaga
gagaggatggggcatatagagcttgcaactcctgtggcgcatgtatggtttttaagaggg
gtgccgagcagaataggaaccctccttgatatgacaataagacaacttgagagagtactg
tattttgaagaatatattgtaatagacccaggagatacccctctgaaagaaaaggaactt
ctctcagaagacgaatataagaaaaagctctctgaatttggcagcagattcaaggcaggt
atgggtgcagaggcaataagagagcttttgaaaaaggttgatctcgagacacttgcaaag
gatttaaaggaaaaaatagatgctgtttcatcacttggtattaagaggaaacttactaag
agattaaagatagttgaggcatttataaaatcagagaatcgtcctgaatggatgatactc
gatattatacctgtgctacctcctgatttaagaccgctcgttcctcttgatggcgggcgt
tttgctacatctgacctcaatgacctttacagaagggttataaataggaataacagactc
aaaagacttatggatttaaaggcaccaagcgttattataaaaaatgaaaagaggatgctt
caggaagctgttgatgcgctgtttgataacagcaaaaaggcaaaggttttgaaggcaggc
ggtaagagggcattaaagtctctaagtgatatgataaagggtaagcaaggcaggttcagg
cagaatctgcttggcaagagggttgattattcaggacgctctgttatagttgttggccct
gagcttcaactcaatcagtgtggtttaccaaaacgaatggcgcttgaactttttaagcca
tttgtctttaataagcttgaagagaaaggttatgcaactacgataaaacaggcaaagaga
ttggttgaaaaggaaaccccagaggtgtgggatgcactggaagatgttattcgtgagcat
cctgtgcttttaaaccgtgctccaacccttcacagactcggtattcaggcatttgatccg
ataattgtggagggtaaggctataaagctgcatccccttgtctgtacagcatttaatgca
gactttgacggtgatcagatggcagtgcatgtaccactttcaatagaagcacagatagaa
gcaagggtgcttatgctttcagtaaacaaccttctttctcccgcaaatggtaaacctatt
gttgtgccaacacaggatatggttttaggtatttactatctcacaaaacagaaaaatggt
gccaaaggtgagggaaagatatttgctgatattgaggatgtacgctctgcttatgattcc
aatattgttgaagagcatgcaagaataaaggtaaggatgaatggtgaacttgttgaaaca
acagtgggcagggttttattgagtgaaatacttcctcattcagttccattttctatggtt
aataaagaattgacaaaaaaggagttaggaaagctcatagagtacatacacaagacactc
ggtaagagagagactgttgtatttttgaataacctcgaaaggctcggttttggttatgct
acaaagtctggaatttcaatatgtattgatgacatgcatgttccaacaaagaaggcagag
ctaataaaagaggcagagcaagaggtcatggaggttcagagacagtatgcagatggtctt
ataactcagggtgagaggtacaataaggtcatcgatatttgggcaaatgtgacagaaagg
gttgctgaggagatgatgaaggaactcggtgccgaagacggcaagccgctttctgatgag
gaattgaaagagagaaggacatttaataacatctttatgatggctgactcaggagcaagg
ggaagtactgcacagataagacagcttgcgggcatgaggggactgatggcaaagccatct
ggagagattatagagactccgattacagcgaatttcagggaagggctaacgccattgcaa
tattttatctcaactcatggtgcaagaaagggacttgcagatactgcattaaaaacagcg
aatgcaggatacctgacaaggagacttgttgatgttgcacaggatgtgatccttacagaa
gatgattgtggaacaagagaaggtatagtggttactgcacttattgagggtggagagata
atacaaccattggaggacaggatatttggcaggacacttgctgagtcattaaaagaccct
attacaaatgaaatcattgcaaatagaaatcaggagatagatgatgagcttgcaaagaag
attgttgatgctggcattgacagggtaaagataaggtctgtgcttacatgcaattcaagg
agtggggtttgtgcaaaatgctatggcagggaccttgcaagaggagatgccatagagata
ggagaagctataggcattattgctgctcagtctattggtgagccgggcacacagcttacc
atgagaacattccatattggtggtgctgcaacaaaggttatcgaacaggcaacacttgag
cctaagaattcagggtatgtaaagtttatagatctcaatgctgttaaaaacaaggaaggt
gttcttattgtcctcaacagaaatgccatgatagctattgttgataaatcaggtagggaa
aaagagaagtataaccttgtgtacggtgcaaggatttttgcagaggatggacagaagata
gaggcaggtcagcgtcttgtagagtgggatccttattcgacacctattctgactgagata
ggagggaggatagcacttggagatatagtggaaggagttacagtcaaagaagaggttgat
gagacaacaggtcttgcccacaaagttataatagactatcctgcaaatatgaggccgaga
gtctccattaaagatgaacacggaagaacagcaaagattcctggaacgaataatcccgca
aggtatctgttgccatcaggtgcgcatctgcttgttgataagggcgatgttgtaatgccc
ggtgatattcttgcaaagataccgagagagacaacaaagacaaaagatattacaggtggt
ttgccaagggttgcagaactttttgaggcaagaagaccaaaggaacaggcaatagttaca
gagatagatggcatagtagaattcagaggtgcacacaagggaatgagggttgtagtcgta
aaaggaggagaagattcaagagaatatctgattccgaaaggcaaacatgttactgtacat
gaaggggattgggtaaaggcaggagagccattaatggatggagcagtaaaccctcacagt
atccttgatatacttgggccaaaggaattgcagagataccttgtggatgaagtgcaaaag
gtttacagactgcaaggtgtttctataaacgacaagcatatagaggtaatagtgcgtcag
atgatgagaaaggtgcggattgaagaccctggagacactacattcctcattggtgacgag
attgacagaataacctttatagaagaaaatgaaagggtaagggctgagggtggaaaggct
gcaagggggaggcctatgctgcttggtattacaaaggcgtctcttgcaacagagagctgg
gtctctgcagcatcatttcaggagactacgagggttctcacagaagctgcattaagtgga
gctgtagatgagttaaaaggtcttaaagagaatgtaataatgggaaggataattccagca
ggtacaggaatgccttcttacagagagacatttattaaaggtgacttttactctatgcaa
cttgaacacgaagaggtagagacagaataa
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