Dissulfurispira thermophila: JZK55_06680
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Entry
JZK55_06680 CDS
T07039
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dtp
Dissulfurispira thermophila
Pathway
dtp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dtp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JZK55_06680 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtp03021
]
JZK55_06680 (rpoD)
Transcription machinery [BR:
dtp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JZK55_06680 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Syntaxin
Flagellin_C
CDC37_M
Img2
DUF2203
Motif
Other DBs
NCBI-ProteinID:
BCB95746
UniProt:
A0A7G1H133
LinkDB
All DBs
Position
complement(671858..673393)
Genome browser
AA seq
511 aa
AA seq
DB search
MPKIDDNPFNIYENNFDEDNEEEVVHKNFPLEEDAEPIYSEEVVKRAIEQEYDPLKAYLK
GISSIPLLTKDGEIEIAQKIEKGKLKICGAIFTIPFVLNKLITLGRLVEKGEAPLVELIQ
DGEDLSDDDILEEKEKFSKITESINSLFTRRKKLLKEGGFCVESKKTPAKGNAPICKLLE
ENKNQILQKIRELNLRDDVINAFFEKLKKINGQIQSMQKDLQKAKKTKNNSSKIKDLATN
IRSIESTVGLRTSEIKKTIQELEKAEIEVNNAKGQLVESNLRLVISIAKRYIGKGLSLGD
LIQEGNIGLMRAVDKFEYRRGYKFSTYATWWIRQAISRAIADQSRTIRIPVHMIENINKI
NKATKELVQELGVEPGPEEIANRSKLPLDKVKNILKISKEPISIETPIGEESDTMLKDFI
EDKGNLSPLDEVIHEDLKAHIDRVLCTLSPKEEIVIRKRFGIGEDSPHTLEEVGQEFDVT
RERIRQIEVKAIRKLKHPARSRWLRDFLGKS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
ttgccaaaaattgatgacaatccctttaatatttatgaaaacaatttcgatgaggacaac
gaggaagaagtagttcataaaaatttcccattagaagaggacgcagaacctatttattca
gaagaggtcgtaaaaagagctatagagcaagaatatgaccccctgaaggcgtatttaaaa
gggataagttccatccctttgcttacaaaagatggagagatagaaattgcacaaaaaata
gaaaagggtaaattaaagatatgcggtgcaatattcacaatcccttttgtcttaaataag
ctgataacgctgggtagactcgtagaaaaaggagaggcaccccttgtagaactcattcag
gatggagaagacttatccgacgatgacatacttgaggagaaagaaaaattttcgaaaatt
acagaatctataaactcccttttcacaagaagaaagaaacttttgaaagaaggtggtttc
tgcgtagaaagcaaaaagactccggcaaaagggaatgctcctatatgcaaacttcttgag
gaaaataaaaatcagatactccaaaagatcagagaacttaatctcagagacgatgttata
aatgctttttttgaaaaattgaaaaagataaacggacaaatacaatccatgcaaaaagac
cttcaaaaggcaaaaaaaacaaaaaataattcatcaaaaattaaagatttagcaacaaat
ataaggtcaatagaatcaacagtaggacttcgtacatcagaaataaaaaagactattcaa
gaactcgaaaaggcagaaatagaagtaaataatgcaaaaggacagcttgtagaatcaaac
ctcagattagtcataagtatcgcaaagagatatattggaaagggattgagtcttggagat
ttaattcaggaaggaaacataggcttgatgcgggctgttgataaattcgaatatagacgt
ggatataaattcagcacctatgccacatggtggataagacaggcaataagcagggcaata
gcagaccagtcaaggacaataagaattcctgtgcatatgatagaaaacataaacaaaata
aacaaagctactaaggaactggtgcaagaactcggtgtagaaccgggtccagaggaaata
gccaacaggtctaaactccctcttgataaggttaaaaacatacttaaaatatcaaaagaa
cctatatctatcgaaacccctattggcgaggaatctgacaccatgctcaaggatttcata
gaagacaaaggaaacttgtctccgcttgatgaagttatccatgaagacctaaaggcacac
attgatagagtcttatgtacattatctccaaaagaagagatagtaataagaaaaagattc
ggcataggagaagacagcccgcatacccttgaagaagttggtcaggaatttgatgtgaca
agggaacggataaggcagatagaagtaaaggctatcagaaaactaaagcaccccgccaga
agtaggtggctcagggattttcttggcaagtcttga
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