Dissulfurispira thermophila: JZK55_18670
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Entry
JZK55_18670 CDS
T07039
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dtp
Dissulfurispira thermophila
Brite
KEGG Orthology (KO) [BR:
dtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dtp03016
]
JZK55_18670 (rtcB)
Enzymes [BR:
dtp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JZK55_18670 (rtcB)
Transfer RNA biogenesis [BR:
dtp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JZK55_18670 (rtcB)
Prokaryotic type
tRNA splicing ligases
JZK55_18670 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCB96945
UniProt:
A0A7G1H2B3
LinkDB
All DBs
Position
complement(1850938..1852383)
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AA seq
481 aa
AA seq
DB search
MSIERLKRIDDNRLEVPADYKTGMRTKGIIYVDNILEKELEEESIEQVANVATLPGIVGA
SMAMPDIHTGYGFPIGGVAAFDLKEGIISPGGVGYDINCGVRLLRSNFKKDTVVPKLKEL
IEALYNEIPSGVGSKGKIRLSPDDEEKLLLKGARWAVEKGLGDVSDLEKIESGGCLEGAD
PSIISQKAYERGRSQQGTLGSGNHFLEVQYVDEIYDEKIANALGLFKNQITVMIHSGSRG
FGHQVCTDFIEVMERAIQKYNIALPDRELACAPFNSPEAQDYFAAMKAAANYAWCNRQCL
MHWTREVFMSVFNVSPIELEMTLIYDVAHNIAKVEEHIVDGKKKKLVVHRKGATRAFPPG
HPDLPVVYRNIGQPVLIPGDMGRASYVLIGTDKAMKETFGSTCHGAGRVMSRHQAIRQAK
GRAIWREMEDRGIIVRAAGRETLAEEMSEAYKDISNVVEIVHNAGISLKVARLRPLGVIK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtctattgaaagacttaaaaggatagatgacaataggcttgaggttcctgctgattac
aagactgggatgaggaccaaagggattatttatgttgataatatcctggaaaaggaactc
gaagaagagtcaattgagcaggttgcaaatgtggctaccctacctggtattgttggtgca
tcaatggcaatgcctgatattcatacaggatatgggtttccgattggaggtgttgcggca
tttgatttaaaagaagggataatctctccgggtggcgttggttatgacataaactgtggc
gtaaggcttctaagaagtaatttcaaaaaagatacagttgtcccaaaattaaaagaacta
atagaagccctttataacgaaataccatcaggtgttggctcaaaaggaaagatcagactc
agccctgatgacgaagaaaaactgcttttaaagggagcaagatgggctgttgagaaaggg
cttggtgatgtatcagaccttgaaaaaattgagtctggaggctgtcttgagggcgcagac
ccgtctattataagtcaaaaagcatacgaaagaggaaggtcacagcaaggaactctggga
tcagggaatcattttcttgaggttcagtatgtagatgagatatacgatgaaaaaatagca
aatgcccttggtcttttcaaaaatcagataactgttatgatacattcaggttcgagggga
tttggacatcaggtatgtacggatttcatcgaggtaatggaaagggctatacagaaatat
aatattgcactacctgacagggagcttgcatgtgcaccatttaatagcccggaggcacag
gattattttgctgcaatgaaggctgctgccaattatgcgtggtgtaacaggcaatgcctt
atgcactggactcgagaggtttttatgtctgtatttaatgtttctcctatagagcttgag
atgaccttgatttatgatgttgcacacaatatagcaaaggtagaagagcatattgttgat
ggaaaaaagaaaaaattagttgttcacagaaagggtgctacaagagcatttcctcctggt
catcctgatctgccagtggtctatagaaacataggacagcctgttcttataccgggtgat
atgggcagggcatcttatgttcttataggtactgataaagcaatgaaagagacatttggc
tctacatgccatggtgctggaagagtgatgtcgaggcatcaggcaatcagacaggcaaaa
ggacgtgctatatggcgtgagatggaagacaggggaataattgtgagggctgcgggaaga
gagacattagccgaggagatgtcagaggcatataaagatatatccaatgttgttgagatt
gtgcataatgcaggtatttctttaaaggttgcaaggttgaggcctttaggagtaataaaa
gggtga
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