Candidatus Desulfovibrio trichonymphae: RSDT_0035
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Entry
RSDT_0035 CDS
T05578
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSDT_0035 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtr03019
]
RSDT_0035 (pnp)
03016 Transfer RNA biogenesis [BR:
dtr03016
]
RSDT_0035 (pnp)
Enzymes [BR:
dtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RSDT_0035 (pnp)
Messenger RNA biogenesis [BR:
dtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSDT_0035 (pnp)
Transfer RNA biogenesis [BR:
dtr03016
]
Prokaryotic type
tRNA degradation factors
RSDT_0035 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH-I_KHDC4-BBP
KH_2
Gp18_dom_I
Motif
Other DBs
NCBI-ProteinID:
BAV91547
UniProt:
A0A1J1E0Z2
LinkDB
All DBs
Position
47896..50130
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AA seq
744 aa
AA seq
DB search
MLQDIFKPNRVVAEIGGKEVIFESGRMANQAHGAVWMQCGGTVVLVTVCSQPLEFDKGFF
PLTVEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLAS
VISADQANESDVLALTGASAALMVSPLPFEGPVAGGRIGLLNGQFVLNPSFEQQEQSDLN
IIFAASRHALTMVEGDARFLSEDVIIEALEWGRKEIQPLVDAQHKLCELCGKGKMPFTQP
KADSAFVARVHDLAKDAGIEQALLLPDKLPRKDARKTVKMRVMEALKADAAVAGNVEALK
SVADIVGDLEKKLVRARIVNEGTRLDGRDVKSVRPIQIQTGVLPRAHGSALFCRGETKSL
VITTLGSTTDEQRMDSLTGDVTKRFMLHYNFPPYCVGEVKPVRVSRREIGHGALAEKSLR
PVLPPDTDFPFTLRIVAETMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLIKEG
DKFIVLTDILGEEDALGDMDFKIAGTADGVTGVQMDIKIVGLTTDIMRVAMQQAREARVH
ILGEMARALAAPRKALSRFAPQHAEILVNPDIIRLIIGPGGKNIKAITAATGASVDIEDS
GRVSIFAPTAEALEKAREMVAYYDQRPELGKNYTAKVRKVLEIGAIVEVLPNVEALVHVS
QLDVSRVEQPGDVARLGEDMLVKVIEINGDRIRASRKAVLLEEQGRPWSPEETARQPRFD
RGERGGADRHDRGGRDRRGRNDRS
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaggatattttcaaaccgaaccgtgttgtcgcggaaatcggcggcaaggaagtg
atttttgaaagcggccgcatggccaatcaggcgcacggagcagtgtggatgcagtgtggc
gggacggttgtgctcgtcacggtatgttcacagccgcttgagtttgacaagggatttttt
ccgcttactgtggagtattccgaaaaaatgtatgcggccgggcgtatccccggcagcttt
tttcgcagggagatcggcaggccttccgagagagagacgctcgtctcccgtcttatagac
agacccattcgtccgctttttccaaaagggttgaacgaggatgttcaggtgctggcgagc
gtgatttccgctgatcaggcaaatgaatccgatgtgctggccctgaccggcgcttccgct
gctcttatggtttctcccctaccttttgaaggaccggtggccggtggtcgcattgggctg
ctcaacgggcagtttgtgctgaatccttcctttgaacagcaggagcagagcgatctaaac
attatttttgcggcctcgcgccacgcgcttaccatggtggaaggcgacgctcgttttttg
tctgaagatgtgattattgaagcgctggaatggggccgtaaggaaattcagcctttggtt
gacgcccagcataaactgtgcgaactctgcggcaaggggaaaatgccgtttacccagccg
aaggcagacagcgcctttgtggcgcgtgtgcatgaccttgcgaaagatgccggcattgaa
caggcattgcttttgcctgacaagctgccgcgcaaggatgcccgcaagactgtaaaaatg
cgggttatggaagcattgaaggctgacgctgcagttgccgggaatgtcgaggcgctcaag
tctgtggcggatattgtgggcgatctggaaaaaaaactggtgcgggcgcgcattgtcaat
gaaggcacgcggcttgacgggcgagacgtgaaaagcgtacgacccatacagatacagaca
ggcgttttgcccagggcgcacggttctgccctgttctgccgcggtgaaacaaaatctctt
gttataacaacacttggttcgacaacagacgagcagcgcatggattcgctcaccggcgat
gtgaccaagcgctttatgctgcactacaatttccctccctattgcgtcggcgaggtgaag
cctgtgcgtgtctcgcgtcgtgaaataggtcacggcgcgctcgcggaaaaatcactgcgg
cctgttctgccgcctgacacggattttccttttaccctgcgcattgtggcggaaacgatg
gagtccaatggctcatcctccatggctgccgtgtgcggcgggtcgctttcgctgatggac
gcgggcgttcctgtcagcgcgcctgtggccggcgtggctatgggcctgatcaaggagggt
gacaagtttattgtgctcacggacattcttggagaagaagacgccctgggcgacatggat
tttaaaatcgcgggcactgcagacggcgttaccggcgtgcagatggatattaagatcgtc
gggctgacaacggacatcatgcgcgttgccatgcaacaggcgcgtgaagcccgtgtgcat
attcttggcgagatggccagagcgctggccgcaccgcggaaagcactttcgcgttttgcg
ccacaacatgctgaaattcttgtgaatcctgatattatccgtttgattatcggccccggc
ggcaagaacatcaaggccatcacagcggcgaccggcgcgtccgtagacattgaggattcc
ggccgcgtttccatttttgcgccaacggcggaggcattggaaaaggctcgcgaaatggtg
gcctattatgatcagcggccggaactgggtaaaaattatacggccaaggtgcgcaaggtt
ctggagataggggctatagtggaagtgctgcccaacgtggaggcgcttgtgcatgtttcc
cagcttgatgtgagccgtgtggagcagcccggcgatgttgcgcggcttggtgaagacatg
cttgtgaaggtcattgaaatcaacggcgaccgcattcgtgcgagccgcaaggctgtgctg
ctggaagagcagggccgcccgtggtcccctgaagaaaccgcgcgccagccgcgttttgac
cgtggcgagcgggggggggcagacaggcacgaccgcggcggccgtgacaggcgtggacgc
aacgaccggagctga
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