Candidatus Desulfovibrio trichonymphae: RSDT_0123
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Entry
RSDT_0123 CDS
T05578
Symbol
dnaX
Name
(GenBank) DNA polymerase III, subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03030
DNA replication
dtr03430
Mismatch repair
dtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSDT_0123 (dnaX)
03430 Mismatch repair
RSDT_0123 (dnaX)
03440 Homologous recombination
RSDT_0123 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dtr03032
]
RSDT_0123 (dnaX)
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0123 (dnaX)
Enzymes [BR:
dtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RSDT_0123 (dnaX)
DNA replication proteins [BR:
dtr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RSDT_0123 (dnaX)
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RSDT_0123 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
AAA
AAA_22
RuvB_N
AAA_30
AAA_16
AAA_5
AAA_14
AAA_19
AAA_18
TsaE
ResIII
Rad17
DUF815
Zeta_toxin
Herpes_Helicase
nSTAND3
DEAD
SKI
Mg_chelatase
DNApol3-delta_C
AAA_24
PIF1
AAA_2
Motif
Other DBs
NCBI-ProteinID:
BAV91635
UniProt:
A0A1J1E183
LinkDB
All DBs
Position
168198..169886
Genome browser
AA seq
562 aa
AA seq
DB search
MRHTSLAARYRPQTFADVAGQDMVKAVLSRAAAEGRPAAAYLLSGTRGVGKTTIARIFAK
ALNCEHAPVSEPCNECPQCRRITQGAYVDVAEIDGASNNSVDDARALRENITYAPMEGSY
KIFIIDEAHMLSRHAFNALLKTLEEPPPRVVFVFATTEAHRFPLTIVSRCQHFVFRHLTE
EELCTHLSAVLRNERIPFEESAARLIAKRAAGSVRDGMSLLDQALALGGASLTTAGTREV
LGMAGQEIFAGLFDAMRRQDCTAVATISRQVLHAGLDIGFFVQELVGQLRGLFLACEGGA
PAVHALQLSADEAAFLQAIASGFSAAHLHSAWQMALEARRGIVYHPEPAAALELLLLNLA
LLPRLLPVDRLASCLSADAGTTHDAPVNTAYNAQAAQSAAAALQETADSNPCPATEAASA
QVASASDVASYMPRSTNFRPDWEAFCDFCVAEHKVGRPSPPPHLLVDVTADWQGEDLRLT
IKSQILYRQMESQRAALLHALAAFGAQCVHLTLTAPPKPRGARELMEQFSRHPGLQPCFD
VLGATLEHCTDQAQVGTTDLLS
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagacacacatcgctggccgcgcgctaccgcccgcaaacctttgccgatgtggcaggg
caggatatggtcaaggctgtcctctcccgcgctgcagcagagggcaggccagcggccgcc
tatttgctgagcggcacacgcggcgtgggcaaaactaccattgcacgcattttcgccaag
gcattgaactgtgaacacgcgccggtgtcggaaccctgtaatgaatgccctcagtgccgc
cggattacgcagggagcgtatgtggatgtggcagaaattgacggcgcgtccaacaatagc
gtggacgacgcccgtgccctgcgcgaaaatataacgtatgctcccatggagggcagttac
aagatttttattattgatgaagctcacatgttgagccgtcacgcgtttaacgcgcttttg
aaaactctagaagaaccgccgccgcgtgtggtttttgtgttcgccactacggaggctcat
agatttccgctcaccattgtcagccgctgccagcattttgtcttccgccatttgacggaa
gaggagctctgcacacatctgtccgctgtgctgcggaatgagcgcataccatttgaggaa
agcgcggcgcgccttattgcaaaacgtgctgccggcagtgtgcgtgacggcatgtcgctg
ctggatcaggcgctggctctcggcggcgcgagtctgacaacagccggaacgcgtgaggtg
ttgggcatggccgggcaggagatttttgccggtctgtttgacgccatgcggcggcaggac
tgcaccgccgtcgcgacaatctcacggcaggttctgcatgccggcttggatataggtttt
tttgtgcaagagctcgtcgggcagttgcgcggtctttttttggcgtgcgagggcggcgct
cctgcggtgcatgccctgcaactgtccgctgacgaagcggcttttttgcaggcgattgcg
tctggtttttccgcagcgcatctgcactcggcctggcagatggcgctggaggcaaggcgc
ggtattgtctatcaccctgaaccagcggctgccctggagctgcttttgcttaatctggct
ctgctgccgcggcttttgccggtggatcgtctggcgtcctgcctgtcggcggatgccggg
acgacgcacgatgcgcctgtcaacacggcctacaacgcgcaggctgcacagtctgcagca
gcggctttgcaggagactgccgattcgaatccgtgcccagcaacagaagccgcttccgcg
caagtcgcatccgcttcggacgttgcgtcatacatgcctcgttcgacgaattttcggccg
gactgggaggctttttgcgatttttgcgttgcagaacacaaagttgggcgtccatcgcct
ccaccgcacctgcttgtggatgtgacggcggactggcagggggaagatctgcgtctgacg
atcaaaagtcaaatcctgtaccggcagatggagtcgcagcgcgcggcgctgctgcacgcg
cttgcggccttcggcgcgcagtgcgtgcacctcacgctgacagcgccgccaaagccgcgt
ggcgcgcgtgagcttatggaacaattcagtcggcatcctgggcttcagccctgtttcgat
gtgcttggggctacgctggaacattgtactgaccaggcgcaagttggcaccacggatctt
cttagttga
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