Candidatus Desulfovibrio trichonymphae: RSDT_0282
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Entry
RSDT_0282 CDS
T05578
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RSDT_0282 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtr03021
]
RSDT_0282 (rpoC)
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0282 (rpoC)
Enzymes [BR:
dtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RSDT_0282 (rpoC)
Transcription machinery [BR:
dtr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RSDT_0282 (rpoC)
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RSDT_0282 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
BOP1NT
Motif
Other DBs
NCBI-ProteinID:
BAV91794
UniProt:
A0A1J1DPN2
LinkDB
All DBs
Position
complement(369678..373892)
Genome browser
AA seq
1404 aa
AA seq
DB search
MSLDDLFITRDTSASITNVRNLKAIQISIASPEVIRAWSYGEIKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELATPVAHIW
FLKTLPSKIATLLDMTMADLEKVLYFDSYIVLDPGQTNLQKCQVVSEEQYLQIIDHYGRD
DILAVGMGAEAVRGLLEEMDMKKLRTELRTESETTKSQTKKKKLTKRLKIVEAFLESQNK
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPEIIIR
NEKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VITVGPYLKLHQCGLPKKMALELFKPFIYSELEKRGHASTIKSAKKMLEREELVVWDILS
EVVREYPILLNRAPTLHRLGIQAFEPLLVEGKAIRLHPLVCSAYNADFDGDQMAAHIPLS
VEAQIECRVLMMSTNNILSPANGGPVIVPSQDIVLGLYYMTVERGFEHGEGMTFCAPWEV
EAAYDAGAVSLHARVQVRMQNGTLCHTTPGRVLVSSILPDNLAFDLVNRVLTKKNIAKLV
GAAYRQCGIKSTVILCDRLKDMGYEFATRAGVTIGVKDLIIPKKKKDILAASQSEVDDIE
RQYRDGIITRTEKYNKVVDVWTKTTQDVSTEMTEEISYDVLTDPKTGRTETHQSFNPIFM
MSNSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLA
DTALKTANSGYLTRRLVDVVQDVIVSEHNCGTVDGIELTHLKEGGDVNPPLAERAIGRVL
LYPVQDPDDPEHVLIAENTLITENEATLLNDKGIFSITMRSPLTCQAERGICALCYGRDL
ARGHLVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASSTIEKNRFEALEAGRVILNRV
REVTNRGSSHLVLGKSGQMTIVDPQGRERAKYILPNGARLMVAHGQDVAKGAVLAEWDPF
NEPFVAEEDGLVRFSDIIDGKTVQEKVDEVTRQASLTIMEYRTTNFRPSISICDASGDVK
KREQGMAKAVYSLPVGSILMVKDGESIQAGDIIARKPRETSKTKDIVGGLPRVAELFEVR
KPKDKAEVSEIAGTVAYAGESKGKRKLIVTPEIGDAREYLVPKGKHITAADGDFVEAGDP
LTEGYPELHDILHTCGEKYLARYLVDEIQEVYRFQGVDINDKHIEVIVRQMLKKVTILDS
CGTSFLVGEQVDKNDFKAENQRAVAEGGLPATAKPLVLGITQASLTTSSFISAASFQETT
KVLTEASLKSKMDYLQGLKENVIVGRLIPAGTGYREYVHGDIDVPDQKERPDKFLEEMEE
NPVLVNLAGQSNERGKTLKQQDKF
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggacgatcttttcattacgcgcgacacgtctgccagtataaccaacgtacgt
aacctcaaggcgatacaaatttccatcgcatcgccggaggtcattcgcgcatggtcttac
ggcgagatcaaaaaaccggaaaccatcaattaccgcacattcaaacctgaacgcgacggc
cttttctgcgcaaaaatctttggaccggtcaaagattatgagtgcaattgcggcaaatac
aagcggatgaagcatcgcggcattgtgtgcgaaaaatgcggtgtggaagttattgcttcc
aaagtgcgcagggagcgcatggggcacattgaacttgcgacgcctgttgcccatatatgg
tttttaaaaacactgccttccaaaatcgccaccctgctcgacatgaccatggccgatttg
gaaaaagttttgtattttgattcatatattgtgctggatccggggcagaccaatctgcaa
aaatgtcaggttgtttcagaagaacaatacctccagattattgatcactacggccgggac
gatattcttgcggtaggcatgggcgctgaagctgtgcgcggcctgcttgaagaaatggac
atgaaaaaactcagaactgaactgcggacggaaagcgaaacaacaaaaagtcaaaccaaa
aaaaagaagcttacaaaacggcttaaaatagttgaggcttttcttgaatcacagaacaag
cccgaatggatgatcatggaagtcattcctgtcatcccgccggaattgcgccccttggtt
cctcttgatggcggccggttcgcgacgtccgatcttaacgatctctaccgccgcgtcatt
aaccgcaacaaccgtttgaaacgcctcatggaactgggcgctcccgaaattatcatacgc
aatgagaaacgcatgcttcaggaggccgttgacgcgctttttgacaacggcagacgcggc
agggccataaccggcactaacggtcggccgctcaagtccctctccgatatgattaagggc
aagcaggggcgttttcgccaaaacctcttgggcaagcgcgtcgactattccggtcgttca
gttattacggttggaccgtatctcaagctccatcagtgcggcctgcccaaaaaaatggct
ttggagcttttcaagccttttatttattctgaacttgaaaagcgcggacatgcctccacc
attaaaagcgcaaaaaaaatgctcgagcgcgaagagttggttgtctgggacattctctct
gaagtggtgcgtgagtaccccattctgctcaaccgcgctcccacgctacaccgtctgggc
atacaggcctttgaacccctgcttgtggaaggcaaggccattcgccttcacccgcttgtc
tgttccgcatataatgcggactttgacggtgaccagatggcggcgcacattcccctttct
gttgaagcgcagatagaatgccgcgttttgatgatgagcaccaacaacattctttcacca
gcaaacggtgggccggttattgtaccctcacaggatattgtgctcggcctttactatatg
actgttgaacgtggctttgaacacggtgaaggcatgactttttgcgctccgtgggaagtt
gaagcggcttacgacgccggcgcggtttctctgcacgcgcgcgttcaggtgcgcatgcaa
aacggaacgctgtgtcataccacgcccggccgcgtgctggtcagcagcattttgcccgat
aatctcgcctttgaccttgtcaaccgcgtgctgacaaaaaaaaacatcgccaaacttgtt
ggcgccgcttaccggcagtgcggcatcaaatccaccgtcattctctgtgacaggctaaaa
gacatgggttatgaattcgctacgcgcgccggcgtgacaatcggcgtcaaagatctgatc
attccaaaaaagaaaaaagatattctggcagcgtctcagtctgaagtggacgatattgaa
cgtcaataccgcgacggcatcattacccgtacggaaaaatacaacaaggttgtggatgta
tggacaaaaaccacgcaagacgtttccacggaaatgaccgaagaaatttcatatgatgtg
ctgactgacccaaagaccggcagaacagaaacacaccagagctttaatcccatcttcatg
atgtcaaattcaggcgcgcgcggcaatcaggatcaaatgcgccaacttgccggcatgcgc
gggctgatggcaaagccatccggagaaattattgaaacgcccatcacatcctccttccgt
gaagggctttccgtgctgcaatatttcacgtccacgcacggcgcgcgcaagggtcttgcc
gataccgccctgaaaacggcaaactccggctatttgacccgccgccttgtggatgtcgtt
caggatgtgatcgtctctgagcacaactgcggcacagtggacggcattgagctgacgcat
ttgaaggaaggcggcgatgtgaaccccccccttgccgaacgcgccatcggtcgcgtgctc
ctctaccctgtccaggatcccgacgatccagaacacgttctcattgcagaaaacaccctg
attacggaaaatgaggccacgcttttaaacgacaaaggcattttctccattacaatgcgt
tctcccctgacatgtcaggcggagcgcggcatttgcgccctctgttatggacgggatctg
gcccggggccatctcgtcaatatcggtgaaacagtgggcattatcgccgcccaatccatc
ggtgaacctggaacgcagctgaccatgcgcacttttcatatcggcggcaccgcgtcaagc
actatcgaaaaaaacaggtttgaagcacttgaagcgggccgggtgattttgaaccgcgtc
agggaagtaaccaaccgcggcagctctcaccttgtgctcggcaagagcggtcagatgact
attgttgatccgcagggacgagaacgtgcaaaatatattctgcccaacggcgcgcgtctt
atggtggcccatggccaggatgtggcaaagggcgcggtgttggcggaatgggatcctttc
aatgaaccttttgttgcggaagaggacggccttgtccgcttctctgacatcattgacggc
aaaactgtgcaggaaaaagtggatgaagtcacgcggcaggcttcgctgaccattatggaa
taccgcaccacaaactttcgtccgtccatttccatctgtgacgcaagcggtgatgtcaaa
aaacgcgaacagggcatggcaaaggctgtttattctctgcctgtcggctccattctcatg
gtgaaagacggtgaaagcattcaggccggcgatattatagcccgcaagccacgtgaaaca
tccaaaaccaaggacatagtcggcggcctgccgcgggtggcggaactttttgaagtgcgc
aaacccaaagacaaggccgaagtttcagaaattgccggcaccgtcgcctatgccggagaa
tccaagggtaagcgcaagctgattgttacccctgaaataggtgatgccagagaatatctg
gttcccaagggcaaacatataactgctgcggatggcgattttgttgaagcgggcgacccg
ctcaccgaaggctatccggaactgcacgacattttgcacacctgcggcgaaaaatatctt
gcgcgttatcttgtggatgaaattcaggaagtctaccgtttccagggtgtggacatcaac
gacaagcacattgaggttattgtgcggcagatgcttaaaaaggtaactatccttgattcc
tgcggcacatccttccttgttggagagcaggtggataaaaacgattttaaggcggaaaat
cagagggccgttgctgaaggtgggctgccggctacggcgaagccgttggtgcttggcatt
acacaggcttctttgacgacttcgtcttttatttcagcggcatcttttcaggaaaccacc
aaggtgctcacagaagcctctctgaaaagcaagatggactatctgcaaggactcaaggaa
aacgttattgtcggccgcctgatccccgccggcacaggctatcgcgaatatgtgcacggc
gacatagatgtgccggatcaaaaggaacgaccggacaagtttcttgaagaaatggaagag
aaccctgttctcgtcaatctggcagggcaatcgaacgaacgcggcaagacactgaaacag
caagataaattttaa
DBGET
integrated database retrieval system
