Candidatus Desulfovibrio trichonymphae: RSDT_0352
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Entry
RSDT_0352 CDS
T05578
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr00470
D-Amino acid metabolism
dtr00550
Peptidoglycan biosynthesis
dtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RSDT_0352 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RSDT_0352 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
dtr01011
]
RSDT_0352 (murD)
Enzymes [BR:
dtr01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
RSDT_0352 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
dtr01011
]
Precursor biosynthesis
Amino acid ligase
RSDT_0352 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
NAD_binding_8
FAD_binding_3
AlaDh_PNT_C
DAO
Thi4
NAD_binding_7
Pyr_redox_2
TrkA_N
NmrA
HI0933_like
3HCDH_N
Pyr_redox_3
Pyr_redox
Motif
Other DBs
NCBI-ProteinID:
BAV91864
UniProt:
A0A1J1E357
LinkDB
All DBs
Position
complement(454269..455579)
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AA seq
436 aa
AA seq
DB search
MALEKIRGQRVHAGDPAVVVGAGRSGLAAVRLLIQKGARVRLLERNAAAVSGDTRELLRA
MDVEIIVGEHHPEHFEHASFVVPSPGMPISRLAEHLGRKGRSTAPEVLAEMELAWRCLAD
EPVLAVTGTSGKTTTASLAAAMLQAQGYSVFLGGNIGTPLSEYVLSRRKADVLVLEVSSF
QLQACSTFCPRVGVLLNIAENHLDYHKDMREYTETKFRLFRCQNKEDLAVLGVDLKKLAG
EFNLKARQVYIRESGRFSESRLLGGHSRVNQEAAWQACRFFGVGEADAAAAVARFKPLPH
RLEVLRKHNGVLYVNDSKSTTVAALRVAMQAFDQPVRLLCGGKFKGGHLQELREIVRSHV
IDVAIFGASREVFEQAWQDIVPISWHENLESAVLHASSGAREGDVILLSPATSSFDLYTN
YMARGDDFKRIVEGLS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttgaaaaaattcgggggcaacgcgtccatgccggagatccggctgtggttgtc
ggagccgggcgttccggacttgccgcagtgcgccttctgattcagaaaggcgcgcgcgtg
cgccttcttgagcgaaacgccgccgccgtgtccggagatacgagagaattgctgcgtgcc
atggatgtggaaattattgtcggcgaacaccacccagagcattttgaacatgcctctttt
gttgtgccgagccccggcatgccgatatcccgtcttgcggaacatcttggcagaaagggc
cgatcaacggcgcccgaagtgctggcggaaatggaacttgcctggcggtgccttgctgac
gaaccggtgcttgccgtgacaggcacaagcgggaaaacaaccacggcgtctctggctgcc
gctatgcttcaggcacagggttattccgtgtttttgggggggaatatagggacgccactt
tcagaatatgtgctttccaggcgcaaagcggatgtgcttgtgttggaggtttccagtttt
cagttacaggcgtgttccaccttttgcccgcgtgtaggcgtgcttttgaatattgcagag
aatcatctggattatcacaaggatatgcgtgaatacactgagacgaaatttcgtctgttt
cgttgccagaataaagaggatctggctgtcttgggagttgatctgaaaaaactcgccgga
gaattcaacctcaaggcacgtcaggtatacatacgggaaagcggtcgtttttctgaaagc
aggcttctgggcggccatagcagagtgaatcaggaagcggcctggcaggcctgccgtttt
tttggagtcggcgaggctgatgccgctgcggcggtcgcccgttttaagcctttgccgcat
cgtctggaagtgcttcgaaaacataatggcgttttgtacgtgaacgattccaagagtacc
actgttgcggccttgcgggtggccatgcaggcttttgatcaacctgtgcgtcttttgtgc
ggtggcaagttcaaaggcggacatctgcaggaactgcgcgagattgtccggagtcacgtc
attgatgtggccatttttggggcgagccgtgaggtgtttgaacaggcctggcaagatatt
gttccgataagctggcatgaaaatcttgaatccgctgtgctgcacgcgagttccggcgcg
cgggaaggtgatgtgattttgctttctccggccacatccagctttgatctttacaccaat
tatatggctcgtggagatgatttcaaacgtattgtggaagggttgtcatga
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