Candidatus Desulfovibrio trichonymphae: RSDT_0369
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Entry
RSDT_0369 CDS
T05578
Symbol
pyc
Name
(GenBank) pyruvate carboxylase
KO
K01958
pyruvate carboxylase [EC:
6.4.1.1
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr00020
Citrate cycle (TCA cycle)
dtr00620
Pyruvate metabolism
dtr01100
Metabolic pathways
dtr01120
Microbial metabolism in diverse environments
dtr01200
Carbon metabolism
dtr01230
Biosynthesis of amino acids
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RSDT_0369 (pyc)
00620 Pyruvate metabolism
RSDT_0369 (pyc)
Enzymes [BR:
dtr01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.1 pyruvate carboxylase
RSDT_0369 (pyc)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
PYC_OADA
Biotin_carb_C
Biotin_carb_N
HMGL-like
ATP-grasp
Dala_Dala_lig_C
Biotin_lipoyl
zinc_ribbon_2
ATP-grasp_3
ATPgrasp_Ter
DZR
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
BAV91881
UniProt:
A0A1J1DPW2
LinkDB
All DBs
Position
complement(478984..482685)
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AA seq
1233 aa
AA seq
DB search
MGNKTFAEVQNFLQGKVILVANRGIPARRICRSIREGFDAVAAMTAADVDKTAPAASTAQ
ELLLLGPEPRSYLDIDKIITKARQRGVVGIHPGWGFASEDTRFPQRCKEAGITFIGATAE
AMNLLGNKVQAREVARRLRIPVVPGSDGAVDIADTRQLIDEIGLPIMLKAEGGGGGRGIF
TIYNQAELEDAFFKASMMAQASFGNPHLFLEKFLDNVRHIEIQIIADMYGNVFAFDERDC
TVQRNHQKLIEITPSPWLGMTRDLRERLKDYARRLIRAVGYYSLATVEFLITPDGSPYLI
EVNTRLQVEHGITECRYGIDLVEEQIAVAFGAELRYREESLRASYCSMQVRINCENPQNN
FEPNSGLITRYVSPGGLGVRLDSNISAGYEFPANYDSAGALLITYAHDWEKTLGIMDRAL
SEYIIGGIKTTIPFFRQVLKNPFFRKGDINTYFIANHPELMLYTDLAPEGERLARLVAEI
SAKGYNPYLQLGAYRSATTPALGPFEPVLPPISSSVQSKPSPYPQGDRLATLDFIRDSGW
IHFSDTTPRDFTQSNSGNRFRLAEDKLLGPYLDNVGYFSIENGGGAHFHVSMLANMTYPF
SEANEWNNFAPKTFKQLLVRSTNVLGYTPQPRNLMHKTGEMICDCYQVVRCFDFLNHIEN
MRPIAEVVLSRKDVIFQPALSMSWAKGFDVSHYLDVTESILRMTSDIMGVSSKTVSRSII
LGLKDMGGVCPPRFMTELVEALRKRWPELVLHYHRHYTDGLFVPACGAAAKAGAHILDVG
LGAAVRSYGQGDVLSTMAYLEDELSLTCRLNKNAIRDANFVCKQIMPYYDRYCSPYFQGI
DYDVTLHGMPGGATSSSQEGVMKQGYIHLLPYMLKFLEGTRRIVRYHDVTPGSQITWNTA
FLAVTGAWKRGGEEEVRYLLEVLNEATRTPQTELSSEMRKARLIVYQDCNDAFRNLLLGK
FGKLPLGFPADWVYKSAFGAEWKTAVAKRTEASPLETLQNINMDLEEQTCTDILKRKPNA
EEFILYLNHPADALKAIQFKAQYGDSNNLPLHVWFEGLKIGQDLYFNETKGKPHHLVLLS
ISRPSEMGVSVCRYVLDSEIMSYEVKVSQPTGPRVKGVAMADPTNRYHIAAPSNGDLWVM
YVHPGDIVKAGEEVFNVSIMKQEKAVLASVDGIVKRVLKTADFKGNKQMISVCEGELIVE
LAPVPRLCSHPSCGQPIPPDNAAFCPHCGSRVE
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacaagacattcgccgaggttcaaaattttttacagggtaaagtaattctggtg
gcgaaccgcgggataccggcacggcgtatctgccgttccatacgggagggttttgacgct
gttgcggccatgaccgccgcagacgttgacaaaaccgcgcctgcggcatccactgcgcag
gaattgttgttgcttggccccgaaccgcgctcctatctggatatcgacaaaatcatcacc
aaagccagacagcgtggagtggtagggatacatccaggctgggggtttgcctctgaagac
acacgcttccctcaacgttgcaaagaggcaggcattacctttatcggcgccactgccgaa
gccatgaatcttctcggcaacaaagttcaggcgcgtgaagtggcacgcagactcagaatt
cctgtcgttccagggtcagacggcgctgtggatattgcggacacccgtcaacttatagat
gaaatcggtctgccgatcatgctgaaagccgagggcggcggcggcggcaggggcattttt
actatctacaatcaggcagagcttgaggacgctttcttcaaagcttctatgatggctcaa
gcctctttcggcaatccgcatctttttcttgaaaaatttctggataatgtgcgtcacatt
gaaatccagatcatcgccgacatgtacggcaatgtcttcgcttttgacgaacgcgattgc
acagtacaacgtaaccatcaaaaacttattgaaattacgccttctccttggctcggcatg
acgcgggatctgcgggaacgtcttaaagattatgcccgccggctcatacgtgctgtaggg
tattattctttggccacggttgagtttctgattacccctgacggttcgccttatctgatt
gaagtcaacacgcggcttcaggtagagcatggaataaccgaatgccgctatggcattgat
ctcgtagaggaacagattgccgtggcgttcggcgctgaactgcgctatcgggaagaaagt
ctacgtgcttcatattgttccatgcaggttcgtatcaattgtgaaaatccacaaaataat
tttgagccaaactcgggactgatcacgcgttacgtttctcccggtggccttggtgtgcgg
ctggactccaatatcagcgccggctatgaattccctgccaattatgattctgcaggcgct
ctgctgattacctatgcgcatgactgggaaaaaacgctgggcattatggatcgcgcactc
agcgaatacataatcggcggaattaaaacaacaattccttttttccgtcaggtacttaaa
aatcctttctttcgcaagggagacattaatacatattttatagccaatcatcctgaactc
atgttgtataccgatcttgccccggaaggcgaacgtctggcaagactggtggcagagatt
tcggcgaaaggctataatccctatctacagttgggcgcatatcgttccgcaacaacacct
gcccttggtccgtttgaacctgttctaccgcccattagttcgtccgtccagagcaagccg
tcaccatatccacagggtgatcgtttggctacactggattttattcgtgattcaggatgg
atacatttttctgatacgactccgcgtgattttacacagtcaaattcaggcaatcgtttt
cgtctggctgaagacaaattgctgggaccctatcttgacaacgtcggctatttttccatt
gaaaatggcggcggcgcacattttcatgtgtcgatgttggccaatatgacttatccgttc
agcgaagcaaacgaatggaacaattttgccccgaaaactttcaaacaattgctcgtgcga
tccaccaatgtccttggctacacgccacagccacgcaacctgatgcacaaaactggtgaa
atgatttgcgattgttaccaggtggttcgttgttttgattttctcaatcacatagaaaat
atgcgtcctattgctgaagtcgtcttgtcccgcaaggatgtgatttttcagccggcgctt
tccatgtcatgggcgaaaggttttgatgtgtctcactatctggatgttacagaatctatt
ttacgcatgacaagcgatattatgggcgtctcttcaaaaacagtgtcgcgcagcataatt
ctcggcctcaaggatatgggcggcgtgtgcccgccgcgcttcatgacagagcttgttgaa
gcattgcgcaaacgctggcctgagcttgtgctccactatcatcgtcactatacagacgga
ctttttgtcccggcatgcggcgcggcagcaaaagcaggagcacatattcttgatgttggg
ctgggtgctgcggtacgctcctatgggcagggtgatgtgctgtccaccatggcatatctg
gaagacgaacttagcctgacatgccgcttaaataaaaacgccatacgagacgcgaatttt
gtctgcaaacaaattatgccatattatgatcgctattgttccccctatttccagggcatt
gattacgacgttaccttgcacggcatgcctggtggggccacatcttcttcacaggaaggg
gttatgaagcaggggtatatccatcttctgccctatatgctcaaatttttggaaggaaca
cggcgtattgtcaggtatcatgacgtgactccagggtcacagattacttggaacacggcc
tttttagcagtaaccggcgcatggaaacgcggcggtgaagaagaggtcagatatcttctt
gaagtgctgaatgaagcgacgcgtacaccgcaaacggaactttcttcagaaatgcgcaag
gcgcgtcttattgtctatcaagactgcaatgacgctttccgtaatctgctgttgggcaag
ttcggcaaacttcccttggggttccccgcagattgggtttataaaagcgccttcggcgca
gaatggaaaacggctgttgcaaagcgtaccgaagcgtcgcctctggaaacacttcagaat
atcaatatggatcttgaggaacaaacttgtactgatatacttaaacgcaagccgaacgcc
gaagaatttatcctctatctgaatcacccggctgacgctttaaaagccattcaattcaaa
gcgcaatatggtgattctaataatctgccgcttcatgtctggtttgaaggcttgaagatc
gggcaggatttatattttaatgaaaccaaggggaaaccgcaccatcttgtgctgttgagc
atttcaagaccgtcggaaatgggcgtgtccgtctgtcgttatgtgcttgattctgaaatc
atgagttatgaggtaaaagtcagccagccgacaggtccccgtgtcaaaggtgtcgctatg
gccgacccaacaaaccgttatcatattgcagcgccaagcaacggtgatttgtgggtcatg
tacgtccatcccggtgacatcgtcaaagctggagaagaggtgtttaatgtatccatcatg
aagcaggagaaagctgttcttgcttccgtggatggcattgtgaaacgcgtgttgaagact
gctgatttcaaaggaaacaagcagatgatttccgtatgtgaaggggagttgatcgtcgag
ctcgctcccgtgcctcgtttatgcagccacccatcctgcggccagcctattcccccggac
aatgcggctttttgtccgcattgcggctcgcgcgtggaataa
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