Candidatus Desulfovibrio trichonymphae: RSDT_0381
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Entry
RSDT_0381 CDS
T05578
Name
(GenBank) AddA-like putative DNA repair protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0381
Enzymes [BR:
dtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSDT_0381
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RSDT_0381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Cas_Cas4
Rv1476
Motif
Other DBs
NCBI-ProteinID:
BAV91893
UniProt:
A0A1J1DTA3
LinkDB
All DBs
Position
500415..503621
Genome browser
AA seq
1068 aa
AA seq
DB search
MPQLTQIKASAGSGKTYELTRRFLLRLTQCGNNSAKNAFAACAPIRNDRPLGLGDILAVT
FTNAAAVEMRDRVIRQLKNAALGNPTGDFSLPADRARAWVDTIVRDLSALNIRTIDSLLL
LIVRAAALELNLPPDFQPVFSTEEALTPYLDIFIEQVSRGDDAMRELLRQACLALVNHDN
TPGFLAGDKLRRKLCEVLDDVLRGKYAGRTPRSELEAKLHDMKTTAVQAAQTLLATTMTH
NLPWHKTALAAVAQLAEGRMKSCASVYAGKNNAGELFHKNTTVPDIVATAFEAYAAQARN
WTRTGELIRQALGLEPFMQLAETLVGAFLQSLEQEGALPALLTPQLAGAALNGDHGVPDM
LCRLGTRLRHFLLDEFQDTSREQWLALHPLVLEALSRGGSLTCVGDVKQSIYSWRGGEPE
LFDSVFEDVALTQISPRMEQHILPFNRRSRREVLEHNNRFFAPLADAATALQIMRSLMPQ
DTPEHILQTGAHKIHTAFAGVVQQCPPEAQNGGFVRMKQIQEHDAAALSEAAADCLCRLL
REEIQPRRPLSDVLVLTRGNATARLVAERLVREGLPVITENSLLLAGHPLIVQTVAMLRF
LDAPEDDIAFWTVLTGSVLRDHPEAAGLAWESLHDWRPANAQQPLYLNFRAHRPHIWKRL
LAPFYNQSGLMTPYDIVQEWFARLDVESRFADARTFLRRFLEVLQHAEEKGLADLPSFLA
HWQDKGGEEKVPMSENMNAVHIMTIHKSKGLEAPVVILPWTDFRPYAANNTIAVEKDGML
LAASNQKSLGELYYADMTRQARETLHLLYVAFTRAKDELYAFRTVTPHTKKLCSLDAAMD
ILWRQAGFAPPYISGTPPSTLVRDTKPAAPTPSAQSVAPQPVPTDWRPMLWLPRLKIFRN
PLGRSAFTPEKYGELIHFCLKNLKITGKAGHDASMAVKFSLAHFPLPVPRNKTLREELID
MLEWYASCPEAARWMAHGMPEQSMIDKDGRTLRMDLLVREPGGLLIVEYKSGQPQPRHLD
QIRRYLACLAESGEAGADAARAVLVYISLRRFQPVSPHSASPLCEAYE
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaattaacccaaatcaaggcatccgccggatccggcaaaacgtacgaactgacg
cggcgcttcttgctgcgcctgacgcaatgcggcaacaacagcgcaaaaaacgcttttgca
gcctgcgccccgataaggaatgaccggccgctcgggctcggcgacattctggccgtcacc
ttcaccaacgctgccgctgttgaaatgcgcgacagggttatccgccagctgaaaaacgcc
gccctgggcaatccgaccggggacttttctctgcccgccgacagagcgcgcgcctgggtg
gatacaatcgtgcgcgatttgagcgcgctgaatatccgcaccatagacagcctcctgctc
cttattgtgcgcgccgcggcgcttgaactgaacctgccgcctgattttcagcctgtcttc
tccacagaggaagctctgaccccgtatctggacatctttatcgagcaggtctcacgcggg
gacgacgccatgcgcgaactcttgcgtcaggcatgtctcgcgctcgtcaaccatgacaac
acgcccggatttctggccggagacaagctgcgccgcaagttgtgtgaagtgctggacgat
gtgctgcgcggcaaatatgccggaaggacgccaaggtcggagcttgaagcaaagctgcac
gacatgaaaacaacggccgtacaggcggcgcaaaccctgctcgccacaacaatgacgcac
aacctgccttggcataaaacagccctcgccgctgtagcgcaactggccgaaggccggatg
aaaagctgcgcgtccgtgtatgccggcaaaaacaacgccggggaattgtttcacaaaaac
actacggtgccggacatcgtcgcgacggcctttgaggcttatgccgcacaagcccgcaac
tggacgcggacaggcgaactgatcaggcaagcgctgggccttgagccttttatgcaactt
gccgaaacgctggttggggcatttttgcaaagtctggaacaggagggcgcgctgccggcg
ctgctgacgccgcaactggccggcgcggcgctcaacggcgaccacggcgtgccggatatg
ctctgtcgtctcgggacacggctgcggcattttctgttggatgaatttcaggacacaagc
cgcgaacaatggcttgcgttgcacccgctggtgctggaagctctctctcgcggcggttct
ctgacctgtgtcggcgacgttaaacagtccatctacagctggcgcggcggcgaaccggaa
ctttttgattctgtctttgaagacgtcgcactgacacagatttccccccgtatggaacag
catatcctgccattcaaccgacgcagccgccgtgaagtgcttgaacacaacaacagattt
tttgctcctctggcggacgctgcaacagccttgcaaatcatgagatcgcttatgccgcag
gacactccggaacacattcttcaaacaggcgcccacaaaatacacacagcctttgccgga
gtcgtgcagcaatgcccgcctgaagcgcaaaacggagggttcgtgcgcatgaagcagatt
caggagcacgacgccgccgccttgagtgaggcggcggcggattgtctttgccgcctgttg
cgtgaagaaattcaaccacgcagacccttgtccgacgtgcttgtgctcacgcgcggcaat
gcaaccgcgcgccttgtggcggaacgtcttgttcgcgaaggtttgccggtcatcacggaa
aacagcctgcttttggccgggcatccgctgatcgtccagactgtggccatgttgagattt
cttgacgctcccgaggacgatattgccttctggacagtgctgacaggctctgtcttgcgt
gatcatcctgaggctgcggggcttgcgtgggaatctctgcacgactggcgccccgcaaac
gcgcaacagccattgtacctgaattttcgcgcacaccgaccccacatctggaagcgtctg
ctggccccgttttacaatcaatccggcctgatgacgccttacgacatcgtgcaggaatgg
tttgcgcgccttgatgttgaatcgcgctttgccgacgcgcgcacgtttttacgacgtttt
ctggaagttctgcagcatgctgaagaaaaaggccttgccgaccttccgtcctttctcgcg
cactggcaggataaaggcggcgaagaaaaagtgcccatgtctgaaaacatgaacgccgtg
catatcatgaccattcacaaatctaaaggtctggaagcgcctgtggtcatacttccctgg
acggatttcagaccgtatgccgcgaacaatacgatcgccgttgaaaaggatgggatgctc
cttgcggcgtccaatcagaaaagccttggagaactttattacgcggatatgacccgtcag
gcccgcgaaaccctgcacctgctctatgtggcctttacccgtgcaaaggacgaactgtac
gcatttcgcaccgtcacaccccatacaaaaaagctgtgctcactggacgccgccatggac
atcctctggcgtcaggcgggctttgccccgccttatatttcaggaacaccgccgtcaacg
ctggtccgcgacacaaaacccgcagcccccactccttctgcgcagtctgtcgccccgcag
cctgtcccgacggactggcggcccatgctgtggctgccgcgtcttaaaattttccgcaat
ccgctcggcagatcagccttcacgccggaaaaatatggggagttgatccacttctgcctg
aaaaatttaaaaattaccggcaaagccgggcacgacgcgagcatggcggtgaaattcagc
cttgcgcattttcccctgcctgttccgcgcaataaaaccctgcgagaagagctgatagac
atgctcgaatggtatgcctcctgcccggaagccgctcgctggatggcgcacggcatgccc
gaacaatccatgatagacaaggacggacggacgctgcgcatggacctactggtgcgcgag
ccaggtgggcttcttattgttgagtacaaaagcgggcagccgcaaccgcggcaccttgat
cagatacgtcgctacctcgcctgccttgctgaaagcggcgaagccggcgctgacgccgca
cgcgcagtgctggtctatataagcctgcggcgcttccagccggtttccccgcacagtgcg
tcgcccttgtgtgaggcgtatgagtaa
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