Candidatus Desulfovibrio trichonymphae: RSDT_0389
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Entry
RSDT_0389 CDS
T05578
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSDT_0389 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0389 (mfd)
Enzymes [BR:
dtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSDT_0389 (mfd)
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RSDT_0389 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
Cas3-like_C_2
AAA_30
AAA_16
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BAV91901
UniProt:
A0A1J1DTB1
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All DBs
Position
complement(514324..517776)
Genome browser
AA seq
1150 aa
AA seq
DB search
MMQNTSDLLSGREMLYLQRCGMATRCRLACQALAAGRGAVLVTRGREEFNSARALLALFT
PVLSQGDVPPARPGFDSPCVSLPPPVLWRDKTNWASRLTALYALIRGQPRCLVADLESLL
LLYMPLTFFEAKSLTLLKGGEYSPELVMNQAAEWGYERVSLVNRPGDMAMRGDILDIFPT
GHSRPVRLEFFGNAVEEIRLFDAESQRSLLHIDDLTLLPISPLALNKSESGKAAARCEAL
FDEGRISETHCYSFKKSLDNGGVDLLPGIVFENSSHIEDWLPKDSLWLLPGEADSTEALR
DAQLALKQILESEDAPLPQPANLALRKNSQPAPWRNFQRVFAEPLVAGVEKRGESLPERT
MHSFSDLFPLPGAQDRPWQHLAAGLKEWSHSRRQVVLSFSSERGRTKFLHLAAQEGIAPS
LRYGPEAGGLFALVSPFRSGVELVWDNALVLGEDILYPRAEKTPRVASRAFKGLDSFEEI
SNGDLLVHRDYGIGRFAGLHHLNLNEAANDFLLIEYSGRDKLYVPADRIGLIQRFKGAEG
VEPPLDSLGGAGWIAGRNKVRKAVEKIAADLVEMYAWRKLAKGYRYAPPDDMYSEFESTF
GFEETPDQAQAIADVLADMDKAEPMDRLICGDVGFGKTEVALRAAFRAVAEGRQVALLCP
TTVLAEQHFQTFRTRLAGFPVHVALLSRFVPRVKQKETLSAAAAGQIDILIGTHRILSND
VKLPNLTLLILDEEQCFGVRHKEKLKSLKKNVDVLTLTATPIPRTLQLSMSGIRDLSIIE
TAPQDRKPVATAVLRRDDTMLAGVLACELEREGQVFWVHNRVQGLERVVEHAKKLAPQAR
VGMAHGQMSETALEETMHKFWHGDLDILVCTSIVESGLDFPRANTLVVDHAQMFGLGQLY
QLRGRVGRSDRQAYAFFVVPADGRLSVVAEERLRIIQDMDYLGAGFQLAMEDLRLRGAGN
ILGEVQSGHMSRVGLDLYLEMLEESVARLKGEQPALVAETELTLGLPAHIPSSYIEDGHE
RLRCYKTLTAATDGADREKEALSIRDRFGPLPEELRHFLAVLDCKQFFAQLQVQKADVRR
DCLRLTWAEGQSAVLPERLVELATKTPRARLHPPAGLTLPLPEGLSFPDGLLQIRRTLET
AQVNTRIDGP
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaaacacaagcgatttgctctccggccgggaaatgctctatcttcaacgttgc
ggcatggccacgcgctgccgtcttgcctgccaggcacttgcggcggggcgcggtgcagtg
cttgtgacacggggcagggaagagttcaacagtgcccgcgccctgcttgccctgttcacc
cccgttctttcacagggcgacgtcccaccggcaaggccggggtttgacagcccttgcgtc
tccctgcccccgccggttctgtggcgcgacaaaacaaattgggcatcccgcctcacagcg
ctctatgccttgatcagagggcaaccgcgctgccttgttgccgatctggaaagcctgctg
ctgctctatatgcccctgacgttttttgaggcaaaaagccttacgctgctcaagggcggc
gaatactcgccggagcttgtgatgaatcaggcggcggaatggggctacgagcgcgtcagt
cttgtcaatcgcccgggcgacatggccatgcgcggtgatattctggatatttttcccact
gggcacagccgcccggtgcgtctagaatttttcggcaacgctgttgaagaaatacgcctt
tttgatgcggaaagccagcgctccctgttgcatattgacgatctgacccttttgcccata
agcccgcttgccctgaacaaaagcgagagcggcaaggccgcggcgcgttgcgaggccttg
ttcgatgaaggcagaatcagcgaaacacattgttattctttcaaaaaatctctggacaac
ggtggggttgacctgttgcctggcattgtttttgaaaattcgagccatatcgaagactgg
ctgccgaaagacagcctttggcttttgccgggcgaggcagacagcaccgaagccctgcgt
gacgcgcagcttgcgctcaagcagatactggaaagcgaagacgcccccctgccgcaaccg
gcaaatctggcgttgcgcaaaaactcacagcccgcgccctggcgcaattttcagcgcgtt
tttgccgaacctcttgtggcaggtgtggagaaacggggagaaagccttcctgaacggacg
atgcattccttcagcgaccttttccccctgccgggcgcacaggacaggccttggcagcat
ctggcggccggtctgaaagaatggagtcatagccgccgtcaggttgtgctgagtttttcc
tcagaacggggccggacaaaatttttacacctggccgcccaggagggcattgccccgtct
ctgcgctacgggccggaagcgggcggtctttttgccctggtctcacccttccgttcaggc
gtggaacttgtctgggacaatgcgcttgttctcggtgaagacattctttacccgcgcgcg
gaaaaaacgccgcgcgtggcctcacgcgcgttcaagggactggacagctttgaagaaatc
agcaacggcgatctgcttgtccacagagactacggcataggccgttttgcaggactgcat
caccttaatctcaacgaggccgccaacgattttctgctgatcgaatattccggtcgggac
aagctctatgttccggcagatagaatcggtcttatacaacgttttaagggggctgagggc
gtggagccgccgctcgacagcctgggcggcgccggctggattgccggaaggaacaaggtc
cgcaaagctgttgaaaaaatcgccgcggatctggtggaaatgtatgcctggcgcaaactg
gccaagggctaccgctatgccccgcccgacgacatgtatagcgaattcgagtccaccttc
ggttttgaggagacgccggatcaggcacaggccatcgccgacgtgctggccgacatggac
aaggcagagcctatggaccggctgatctgcggggatgtcggcttcggcaaaacagaggta
gcgttgcgcgcggcctttcgcgccgtggctgaaggccggcaggtggccctgctctgcccc
actaccgtgcttgcggaacagcattttcagacttttcggacgcggcttgccggctttcct
gttcacgtcgccctgttaagccgtttcgtccctcgggtgaagcagaaagaaaccctcagc
gccgctgcggcaggacagattgacattttgataggcacgcaccgcattctctccaacgat
gtgaaactgcccaatctgacacttctgatactggacgaggaacagtgcttcggcgtgcgc
cataaggaaaagctcaaatcccttaaaaaaaatgtggacgtgctgacgctcacggctacc
cccattccgcgcacattgcagctttccatgtccggcatacgggatctctccatcattgaa
acagccccgcaagaccgcaagcctgtcgccacagccgtgctgcgccgcgacgacacgatg
ctggccggcgtgctcgcctgtgaactcgagcgcgaaggacaggtcttctgggtccacaac
agggtgcagggcttggagcgcgtggtggaacacgcgaaaaaactcgcgccgcaggccagg
gtgggcatggcccacggtcagatgagcgaaactgccttggaagaaactatgcacaaattt
tggcacggagatctggatatcctggtctgtacgtccattgtggaatcgggcctggatttt
ccgcgcgccaacacccttgtcgtcgatcatgcccagatgttcggcctggggcagctctat
cagctccgcggccgcgtgggtcgcagcgacagacaggcctatgccttttttgtcgttccg
gccgacgggcgcctgagcgttgtggcagaagaacgtctgcgcatcattcaggacatggac
tatctgggcgcgggctttcagctggctatggaagacctgcggctgcgcggggccggcaat
atcctcggcgaagtgcagtccggccacatgagccgggtcggcctcgacctttacctggaa
atgctggaggaatccgttgcccgcctgaagggcgaacagccggccctcgtcgctgaaacg
gagctgacgttggggctgcccgcgcatattccctcgtcgtatattgaagacggccacgag
cgcctgcgctgctacaagaccctgactgccgcgacggacggcgcggacagggagaaagag
gctctttccatccgggaccgtttcggccctctgcccgaagaattgcggcattttctggcc
gtgcttgactgcaagcagttttttgcgcaactccaagtgcagaaggccgatgttcgtcgc
gactgcctgcgcctgacctgggctgaagggcagtctgccgtattgccggaacgtctggtg
gaactggcgacaaaaacgccgcgcgcgcggctgcaccccccggccgggctgacgctgccg
ctgccggaagggctgtcttttcccgacggtttgctgcaaatccggcgtacactggaaacc
gctcaggtcaatacaagaattgacggcccgtaa
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