Candidatus Desulfovibrio trichonymphae: RSDT_0401
Help
Entry
RSDT_0401 CDS
T05578
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr00300
Lysine biosynthesis
dtr00470
D-Amino acid metabolism
dtr01100
Metabolic pathways
dtr01110
Biosynthesis of secondary metabolites
dtr01120
Microbial metabolism in diverse environments
dtr01230
Biosynthesis of amino acids
Module
dtr_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RSDT_0401 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RSDT_0401 (dapF)
Enzymes [BR:
dtr01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
RSDT_0401 (dapF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
AAA
Motif
Other DBs
NCBI-ProteinID:
BAV91913
UniProt:
A0A1J1DPZ7
LinkDB
All DBs
Position
complement(533269..534135)
Genome browser
AA seq
288 aa
AA seq
DB search
MQNKLRFAKMQGVGNDYVYVNCFEERVEKPSELAPRICDRHFGVGSDGVVLIMPSGTADV
RMRMFNADGSEAEMCGNAIRCVGKYARDHGIVVKDVIRVETAAGIKTVRLLTEAGQVCGA
TVDIGEPVLVAERIPVLMPPAADNPAEKRIIARPMKVDGRVYNITAVSMGNPHAVVFMDN
IDNLALQRLGPCFERHEFFPQRINTEFVEVLSSGKIRMRVWERGAGETLACGTGACAAAV
AGALNGLTGREMDVHLTGGVLHVSWDESDGHVYMTGDAVSVFDGVYCM
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcagaataaattgcgttttgccaagatgcagggcgtcggcaacgattatgtgtatgtg
aattgttttgaagaacgggtggaaaagccctccgagcttgcgcccagaatatgcgaccgg
catttcggcgtgggatcggacggggtcgtgctgattatgccgtcaggcacggcggacgtg
cgcatgcgcatgttcaacgccgacggctctgaagcggaaatgtgcggcaacgccatacgc
tgtgtgggcaagtacgcgcgcgatcacggcattgtcgtgaaggatgtgatcagggtggaa
acggcggcgggcataaagactgtgcgactgctcacagaagccggtcaggtgtgcggcgcc
acagtggacataggcgagcctgtgcttgtcgccgagcgcattcctgtactcatgccgccg
gcggcggataaccccgcggaaaagcgcattatcgcccgcccgatgaaagttgacggccgt
gtatacaacatcaccgcggtttccatgggcaacccgcatgccgttgtgtttatggacaat
attgacaatcttgccctgcagcggcttggcccctgctttgagcgtcatgaattttttccg
cagcgcatcaacacggaatttgtggaagtgctctcgtcaggcaaaatacgcatgcgcgtg
tgggagcgcggcgccggtgaaaccctggcatgcggcacaggcgcctgtgccgcggctgtg
gcaggcgcgttgaacgggcttacaggccgtgaaatggatgttcatctcacgggcggcgtg
ctgcacgtcagctgggatgaaagcgacgggcatgtctatatgacaggcgacgcggtgagt
gtttttgacggcgtttattgcatgtga
DBGET
integrated database retrieval system