Candidatus Desulfovibrio trichonymphae: RSDT_0415
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Entry
RSDT_0415 CDS
T05578
Symbol
ihfB
Name
(GenBank) integration host factor B
KO
K05788
integration host factor subunit beta
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dtr03032
]
RSDT_0415 (ihfB)
03036 Chromosome and associated proteins [BR:
dtr03036
]
RSDT_0415 (ihfB)
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0415 (ihfB)
DNA replication proteins [BR:
dtr03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RSDT_0415 (ihfB)
Chromosome and associated proteins [BR:
dtr03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
RSDT_0415 (ihfB)
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
RSDT_0415 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-CCDC81_bac_2
HU-HIG
Motif
Other DBs
NCBI-ProteinID:
BAV91927
UniProt:
A0A1J1DQ05
LinkDB
All DBs
Position
complement(553455..553733)
Genome browser
AA seq
92 aa
AA seq
DB search
MNKSELIKALVDETNIPLDDATMVVNTFIESMKSSLLAGDRVEIRGFGSFKIKKYGGYSG
RNPKTGEKISVVPKRLTFFRAGKELKELINQK
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagcgaacttatcaaggctctggtcgacgagaccaacattccccttgatgac
gccacaatggtggtgaatacctttatagaatccatgaaatcttccctgctcgccggagac
cgtgttgaaatccgcggtttcggcagctttaaaatcaagaaatacggcggttattccgga
cgtaatccgaaaacaggagaaaaaatctccgttgttcccaaacgactgacctttttccgt
gccggcaaggaattgaaagaattgatcaaccagaaataa
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