Candidatus Desulfovibrio trichonymphae: RSDT_0502
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Entry
RSDT_0502 CDS
T05578
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RSDT_0502 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtr03021
]
RSDT_0502 (rpoD)
Transcription machinery [BR:
dtr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RSDT_0502 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_ner
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
BAV92014
UniProt:
A0A1J1DY46
LinkDB
All DBs
Position
660898..662667
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AA seq
589 aa
AA seq
DB search
MGNLKNIPQIQSLIAKGIGAGFLTFDEVNKAVPMEMSTPELLEEIIGIFEQLEIDIVTPD
KGGKKIASPAAETTEGIVEGSLDLSEDEDSADYSPRNTDPVRMYLREMGAVPLLDRDGEV
VIAKKIEMGEQEVLYALAEVPVAVEELINVGEDLRQNRIKLKDVVKTIEEDDPSEDEMNQ
RTRVILLLDEIKQTFKKKRKIYKKLDECATLERRVTAIQKEIISYKEKIVTRLRDIKLEK
KLIDRISETVEDYVRQMHNCQRDLSAYILSTGRTQAEIQAMFSGLEKRDINPVDAAKDLK
LSVDELFSFKEMIIGKIEILSRLQEKCCHNVTDLEEVLWRIKHGNTAAMRAKQEMIRANL
RLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIA
DQARTIRIPVHMIETINKLMRTARYLVQDLGRDPTPEEIAERMDYPLEKVKKVLKIAKEP
ISLETPIGDEEDSSLGDFIEDKKAIAPAEEVINTKLSEQLAAVLADLTTREEQVLRKRFG
IAEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQPLRSYYEN
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgggtaatcttaaaaatattcctcaaatacaatctctgattgcaaaaggtataggcgcc
ggctttttgacttttgatgaggtaaacaaggcggtgcccatggaaatgagcacgcctgaa
cttttggaagagatcataggcatttttgaacaactggaaatagatattgttactcctgac
aagggaggcaaaaaaattgcatcccctgctgccgagactactgagggtattgtcgaagga
tccctagatttatcagaggatgaagactccgccgattattctccccgcaacactgacccc
gtgcggatgtatctgcgtgaaatgggcgctgtgcccctgcttgatcgcgacggggaagtg
gtcattgccaaaaaaattgaaatgggcgagcaggaggtgctctatgccttggcggaagtg
cctgttgctgttgaagaattgatcaatgttggtgaagacctgcggcagaatcgcatcaag
ctcaaggatgtcgttaaaactatagaagaagacgaccccagtgaagacgagatgaaccag
cgtacccgcgttatcctgcttctggatgaaatcaagcaaactttcaagaaaaaacgtaag
atatacaaaaaacttgatgagtgcgccaccttggaacgccgcgttacggccattcaaaaa
gaaataatcagctataaggaaaaaatcgtcacgcgcctgcgcgacatcaaactggaaaaa
aaactcattgaccggatcagcgaaacggttgaggactatgtgcgacagatgcacaactgc
cagcgcgatctttcggcctatatcctctccaccggacgtacccaggctgaaatccaggcc
atgttctcaggtcttgaaaagcgtgacatcaatccggttgacgctgccaaagatcttaaa
ctcagcgtggatgagcttttttctttcaaggaaatgattataggcaagattgaaatcctg
agccgcctccaagaaaaatgctgtcataatgtgacggatctagaagaggtgctctggcgc
atcaaacacgggaacaccgcggccatgcgtgccaagcaggaaatgatcagagcgaacctg
cgtcttgtggtttccattgccaaaaaatacaccaaccgcggtctgcagtttcttgacctg
attcaggaaggtaacatcggcctgatgaaagctgtggacaaatttgaataccagcgaggg
tataaattctcgacatacgcaacatggtggattcgccaagccattacgcgcgccatcgct
gatcaggcaagaacgatacgcattcccgtgcacatgattgaaacaatcaacaagttaatg
agaacagcgcgctacctggtacaggatctggggcgcgatcccaccccggaagaaattgcc
gaacgtatggactaccctctagaaaaagtaaaaaaagtgctgaaaattgccaaggagcca
atttcattggaaacccccatcggggatgaggaagattccagcctcggtgattttatagaa
gacaaaaaagccatagctccggctgaagaagtaatcaacacaaagctttccgaacagttg
gccgcagttcttgcggatttgacaacacgggaagaacaggtcttgcgcaaacgtttcggc
atcgctgaaaaaagtgaccacacgcttgaggaagtaggcaaactttttaatgtaacacgt
gaacgcattcgccaaatcgaagctaaggccttgcgcaagctccgtcaccctgtgcgcagc
cagcctttgcgttcctattacgaaaattaa
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