Candidatus Desulfovibrio trichonymphae: RSDT_0514
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Entry
RSDT_0514 CDS
T05578
Symbol
xseB
Name
(GenBank) exodeoxyribonuclease VII small subunit
KO
K03602
exodeoxyribonuclease VII small subunit [EC:
3.1.11.6
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RSDT_0514 (xseB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0514 (xseB)
Enzymes [BR:
dtr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
RSDT_0514 (xseB)
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RSDT_0514 (xseB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_S
DUF2116
Motif
Other DBs
NCBI-ProteinID:
BAV92026
UniProt:
A0A1J1DQD6
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All DBs
Position
complement(678561..678806)
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AA seq
81 aa
AA seq
DB search
MTEKTEDLFEKKMSRLQAIVKSLETEDLPLEKGMALYKEGAACSHFCREQLEKARHELAL
WQDGESKDLSLTAALPDDTTE
NT seq
246 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaaaacagaagatctttttgaaaaaaaaatgtcgcgtctccaggcaattgtc
aaatctctcgaaactgaagatttgcccctagagaaaggtatggctttatataaggaaggc
gccgcgtgctcgcatttttgcagggagcaactggaaaaagcccgtcatgagcttgccctc
tggcaggacggcgaatcaaaggatttgagtctgacagccgcattgcctgacgacacgacg
gaataa
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