Candidatus Desulfovibrio trichonymphae: RSDT_0689
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Entry
RSDT_0689 CDS
T05578
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSDT_0689 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtr03019
]
RSDT_0689 (dbpA)
03009 Ribosome biogenesis [BR:
dtr03009
]
RSDT_0689 (dbpA)
Enzymes [BR:
dtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSDT_0689 (dbpA)
Messenger RNA biogenesis [BR:
dtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSDT_0689 (dbpA)
Ribosome biogenesis [BR:
dtr03009
]
Prokaryotic type
rRNA helicases
RSDT_0689 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Acid_PPase
Motif
Other DBs
NCBI-ProteinID:
BAV92201
UniProt:
A0A1J1DQT1
LinkDB
All DBs
Position
complement(911710..913209)
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AA seq
499 aa
AA seq
DB search
MPVLDSYKGRKPQAEAACLSGEIFVSEPEGALPAVAMGDLPAAMRAACARAGWQSLMPVQ
SLVLPYLLEARDIMVQSRTGSGKTGCYLLPLLPRLSAKLKAPQALVLTPTRELAIQVARE
AATIFAETGIRTAAVYGGVGYQQQADALRDGAQLLVGTPGRVLDHLLRRTMHLDELRALI
FDEADRMLSIGFYPDMKEVQRYLPRRRVHTCLFSATYPPHVLKLAAEFMETPSMLSLSHK
QVHVAEVQHLFCEVKPMDKDRALVRLLETENPAQAIIFCNTKANVHYVTGVLQGFGYSAD
ELSSDLSQSRREAVLNKIRAGRLQFLTATDVAARGIDIPALSHVFLYEPPEDHESYIHRA
GRTGRAGAAGTVISLVDVMQRMELKRIAGHYGIALTALPPPTDEDVAVVAGTRLTAILKT
CFRKLTGLERLRAARYVALARELARGNDEEDNAPLLAMLLDAFHQQSLQENRFPDQQPAG
AKGSGSAPVRRRRSRRRAC
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgccggtactggactcttataaaggccgcaagccgcaagccgaagccgcgtgcctgtcg
ggtgaaatttttgtcagcgagccggaaggcgccctgcccgccgttgccatgggtgatctg
ccggcagccatgcgggcggcctgcgcgcgggccggctggcaaagcctgatgcccgtgcag
tcactggtgctgccctatctgctggaagcccgcgacatcatggtgcagtcgcgcacgggc
agcggcaaaaccggatgttatctgctgccgctgctgccgcgtctgtctgcgaaactcaag
gcgccgcaggcgcttgtgcttactcccacgcgtgagctggccattcaggtggcccgtgag
gcagcgacgatttttgcggaaacgggcatacgcacggcggctgtttatggcggcgtcggg
tatcaacagcaggcggacgccctacgcgacggtgcccaactgcttgtgggtacgccgggc
cgcgtgttggatcatctgctgcgccgcaccatgcaccttgacgagttgcgcgccctgatt
tttgacgaggcggatcgtatgctctccattgggttttaccccgacatgaaggaagtgcag
cgctatctgccgcggcggcgcgtgcacacctgcctgttttccgccacctatccgccgcat
gttctcaaactggcggctgaatttatggagacgccctccatgctctccctttcgcacaaa
caggtgcatgtggctgaagtgcagcaccttttttgcgaagtaaagcccatggacaaagac
agggcgttggtgcgcctgctggagacggaaaatccggcccaggccattattttttgcaac
accaaggccaatgtgcactatgtgacaggagtgcttcaaggctttggctacagtgccgat
gagctttcctcagatctttcgcaaagccggcgtgaggcggtgctgaacaaaatacgcgca
gggcggctgcagtttctgacggcgacggatgtggccgcgcggggcatagacataccggcg
ctttcgcatgtttttctctatgagccgcccgaagatcatgaaagctatatccaccgtgcc
gggcgtaccggccgcgccggagccgcggggacggtgatttcgcttgtggatgtgatgcag
cgcatggaactgaagcgcatagcagggcattacggtattgcgcttacggcattgcccccg
cccacggacgaagatgtggccgttgttgccggcacgcgtttgacggccattctgaagacg
tgcttccgtaaacttacaggccttgagcgactgcgcgcggcccggtatgtcgcactggcg
cgtgagcttgcgcgcgggaacgatgaggaagacaatgcgcctctgctggccatgcttctg
gacgcttttcaccagcaaagccttcaggaaaaccgcttccccgaccagcagccggctgga
gcgaaagggtcaggttcggcgccggtcaggcgccggcgttctcgccgccgcgcttgttga
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