Candidatus Desulfovibrio trichonymphae: RSDT_0712
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Entry
RSDT_0712 CDS
T05578
Symbol
rnb
Name
(GenBank) putative exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dtr03016
]
RSDT_0712 (rnb)
Enzymes [BR:
dtr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RSDT_0712 (rnb)
Transfer RNA biogenesis [BR:
dtr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RSDT_0712 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BAV92224
UniProt:
A0A1J1E443
LinkDB
All DBs
Position
953852..955966
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AA seq
704 aa
AA seq
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MPDCVRYPAPGCIVEYMEGNAPQIAMITEESGGHLRLLLPNRREMRLNAARILPWIGPMH
ASGMGREDAVRILESHKKKREALALAVAPLEVWDIAQGEVPQAPARWFAEFFTAEPDADA
VAACGRALLACKSHFRFQPPAFQIFPAETVEKRLAEQREKQVREALVTGGAAFFRLLWEA
ACKKCVLPLSGTSGAECGEWPSPEVAERLKALLRARMVDPESQENENLWRMLVKTLPDVP
HLPLQLLTAWGELPEHYNFWLDRAGYAPGDDWWLPHAGEANALVLTTQNCDAPLCDIPFL
SIDSASTRDVDDAFFVEPNGTGCTLTLALACPALFWPFESPLNKAVLYRGTSIYLPEGTC
HMLPEMMATAAFSLTAGQMRPALCMRIQVNGAGNADDCELFIARVRLAANLCYADCQAVF
DADRKQAPLPDNAARPYADQLRHGLALARLRQQARIAAGAVIMDRVEPVLHLHGDGANTT
VEMEMPAPARDAQNLVAELMILASASAANWACAHSLSMLHRTQDVALPKEYAGIWTLPED
LTRIMRSLASSCLEVQARPHAALAVARYTPVTSPLRRYTDLVNEAQVTHFLQTGTPLWSE
AGLVDILGALSPVLNAAGQAQRFRPRYWKLLYFRQKGDKVWWHGVITEENDAVVNVNLPD
QGLFVRGRRLLFDERAYPGMPVAVRLGKIHPLYNEIQILEAAAQ
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcctgattgcgtgcgataccctgcaccgggctgtattgtggaatacatggagggcaat
gccccccagatcgccatgatcacagaagaatccggagggcatctgcgtctgttgctgccc
aaccggcgcgaaatgcgcctgaacgccgcgcgcattctgccctggatcggccccatgcac
gcgtccggcatgggcagagaagacgctgtgcgcattctggagtcgcataaaaaaaaaagg
gaagccctggcgcttgccgtcgcgccgctcgaagtatgggacatcgcccaaggggaggtc
ccccaggcgccggcgcgctggtttgctgaattcttcaccgccgagccggacgcggacgct
gtagccgcctgcggccgcgcgctgcttgcctgtaaaagccattttcgttttcagccgccc
gcttttcagatttttcccgctgaaacagtggaaaaacgccttgccgagcagcgcgagaaa
caagtgcgtgaggcccttgtcacgggcggcgcggcattttttcgtctgctgtgggaggcc
gcctgcaaaaaatgtgttctgccgctgtcaggaacgagcggcgcggaatgcggtgaatgg
ccctcgcctgaagtggcagaacggctcaaagccctgctgcgcgccaggatggttgatccg
gaaagtcaggagaacgaaaacctctggcgcatgctggtcaaaaccctgccggacgtgccg
catctgcccctgcaattgctcacggcgtggggcgagttgccggaacattataacttctgg
ctggacagggccggttacgcacccggcgacgactggtggctcccccacgccggggaagca
aacgcccttgtgctcactacgcaaaactgcgatgcacccttgtgcgatataccttttctg
agcatagacagcgcaagcacccgtgatgtggacgacgctttttttgtggaacccaacggc
accggttgtacgttgacgctggccttggcctgtccggccctgttctggccttttgaaagc
cctctcaacaaagccgtgctgtaccgcggcacaagcatctatttgccggagggcacatgc
cacatgctgccggaaatgatggcgacagcggctttttcgctgacagccgggcaaatgcgc
cctgcgctgtgcatgcgcatacaggtgaatggagcgggcaacgcggacgattgcgagctt
tttattgccagggtccggcttgcggcaaacctgtgttacgcggactgtcaggccgtattt
gacgccgatcgaaaacaggctcctctgccggacaatgccgcaaggccttacgccgaccaa
ttgcgtcatggactggcgctcgcccgtttacggcaacaggcgcgcattgcagcgggcgcc
gttattatggacagggtcgagcccgtgctgcatttgcacggcgatggcgcgaacacgacc
gtggaaatggaaatgccggcccccgcccgtgacgcacagaaccttgtcgctgaattgatg
attctggccagcgcatcagcggcgaactgggcatgcgcgcacagcctgtccatgctgcac
cgcacgcaggacgtggccctgccgaaagaatacgccgggatatggacactgccggaagac
ctgacccgcattatgcgctcgctcgcctcctcctgcctggaagtacaggctcggccccat
gccgcccttgcagttgcgcgctatacgcctgtcacctcgcccctgcgccgctatacagat
cttgtcaacgaggcgcaagtgacgcattttctgcaaacaggcacacccttatggagcgag
gctggtcttgtggacattctcggcgcgttatcccccgttctgaacgcggcagggcaggcg
caacgtttccgcccgcgctactggaagctgctctatttccgccagaagggggacaaagtc
tggtggcacggcgttattaccgaagaaaacgacgccgttgtcaacgtgaacctgccggat
caggggctgtttgtgcgcggcagacgccttctttttgacgaaagggcatatccgggcatg
cccgtcgcggtgcgcctggggaaaatacatccgctctataatgaaatacaaatattggaa
gcggccgcgcaatag
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