Candidatus Desulfovibrio trichonymphae: RSDT_0830
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Entry
RSDT_0830 CDS
T05578
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSDT_0830 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0830 (uvrB)
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSDT_0830 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RSDT_0830 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
UVR
ResIII
DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAV92342
UniProt:
A0A1J1DYY4
LinkDB
All DBs
Position
1111777..1113795
Genome browser
AA seq
672 aa
AA seq
DB search
MDSVSFLLETDYTPMGDQPKAIAALADNLHAGVRAQMLLGVTASGKTFTMANVIAKCGRP
ALVLAPNKTLAAQLYNEFRELFPHNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSVNDNI
DKLRHAATHALLTRRDVVIVASVSCIYGLGSPEYYARMVIPVEVGQHLSMDSLISRLVEV
HYERNDYDLHRGAFRVRGDALEIIPAYHHEQALRLEFFGDELDAMREIDPLTGKVLSETA
KTVLFPASHFVSARDNLQRAANDIHLELSERLAWFKDQDKLVEAQRLKQRTQLDLEMIEE
LGYCNGIENYTRHLDGRRPGEPPACLFNYFPPDFLLFIDESHITVPQVGGMYRGDRSRKQ
TLVDYGFRLPSALDNRPLRFEEFTALINQVVFVSATPGRYELDEAQGVVAEQIIRPTGLL
DPLTDVRPVTGQMENLLSECRARATRGERVLVTTLTKRMAEDLTEYCCNMGVKARYLHSD
IDTLERMQIIRSLRLGEFDMLVGINLLREGLDIPEVSLVCILDADKEGFLRSAGSLIQTF
GRAARNVNGQVILYADTMTVSMKAALDETCRRRAKQSAYNIAHDITPQSTKKSLESPLNT
LYVGKNVAGRRRGRGRDKAQDAPPGTAEEAAACALALEKEMRQAARELEFELAAELRDRI
RALQAQFITLPE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgtatcttttttgcttgagacagactacacgcctatgggcgatcagccgaag
gctattgcggcgctggcggacaatctgcacgcaggcgtgcgcgcccagatgctgcttggc
gtgaccgcttccggcaagacatttaccatggccaacgtgatcgcgaagtgcgggcgtccg
gcactggtgctggcgcccaacaaaacactggcggcccagctctataatgaattccgcgag
ctttttccgcacaatgccgtggaatattttgtgagctattacgactattaccaaccggaa
gcgtatgtgcccgcttccgacacctatattgaaaaagattcttccgtcaacgacaatatt
gacaaattgcgtcatgctgccacgcacgctctgctgacgcggcgtgatgtggttattgtc
gcgtcggtgtcctgcatttacggcctgggctcgccggaatattacgcgagaatggtcatc
ccggttgaggtcgggcagcatctgtcaatggacagtctgatcagccgccttgttgaagtg
cactacgaacgcaatgactacgatttacaccgcggcgcttttcgcgtgcgcggggacgcg
ctggagatcattcccgcctatcaccatgagcaagctttacgtctggagtttttcggcgac
gaactggacgccatgcgcgaaattgacccgctcaccggcaaggttttaagcgaaaccgca
aaaaccgtcctgttcccggccagtcatttcgtttcagcacgggataatttacagcgcgct
gcgaacgacattcatctggaactgtccgagcgtctggcctggttcaaggatcaggacaaa
cttgtggaggcgcaacgtctgaagcagcgcacacagcttgatctggaaatgattgaagag
ctcgggtactgcaacggcattgaaaattatacccgtcatctggacggccgccggcccggc
gaaccgccggcctgccttttcaattactttccacccgattttctgctgtttattgacgaa
tcgcatatcacggtgccgcaggtgggcggcatgtacagaggggaccgttcccgcaagcag
accctggtggattatggttttcgcctgccttcagccctagataacagacccttgcgtttt
gaagaattcacggcattgattaatcaggttgtgttcgtttcggcaacgccgggacgctat
gagcttgatgaggcgcaaggcgttgtggccgaacagatcatccggcccaccggtctgctg
gatccgctgacggatgtccggcccgtgacgggccagatggaaaatctgttgagtgaatgc
cgcgcaagggcaacgcgcggagaacgtgtgctcgtcacaacactgacaaagcgcatggcc
gaggatttgacggaatactgctgtaatatgggcgttaaagcccgctatctgcattcagat
attgacacgcttgagcgcatgcagattatccggtcactgcggctgggagagttcgacatg
ctggtcggcatcaatctgttgagagaaggtcttgatatcccagaggtttctcttgtctgt
attctggacgcagacaaagagggttttttacgctcagcaggctccctgatacagaccttc
ggcagggccgcgcgtaacgtgaacgggcaggtaattttgtatgccgacacaatgactgtt
tccatgaaggccgctctggacgaaacgtgccggcggcgggcgaaacagtcagcatataat
attgcgcatgacatcacgccgcaaagcacgaaaaaaagtcttgaatctccattgaataca
ctgtatgtgggaaaaaatgtcgctggccgcagacgcggccgcggtcgtgacaaggcgcag
gacgcgccgccgggtactgccgaggaggctgccgcctgcgcgcttgcgctggaaaaggaa
atgcgtcaagccgcgcgtgagttggaatttgagctagccgccgaactgcgcgaccgcatc
cgcgcgctgcaggcgcaatttatcactttgccggaataa
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integrated database retrieval system
