Candidatus Desulfovibrio trichonymphae: RSDT_1067
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Entry
RSDT_1067 CDS
T05578
Symbol
groL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSDT_1067 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtr03019
]
RSDT_1067 (groL)
03110 Chaperones and folding catalysts [BR:
dtr03110
]
RSDT_1067 (groL)
03029 Mitochondrial biogenesis [BR:
dtr03029
]
RSDT_1067 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dtr04147
]
RSDT_1067 (groL)
Enzymes [BR:
dtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
RSDT_1067 (groL)
Messenger RNA biogenesis [BR:
dtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
RSDT_1067 (groL)
Chaperones and folding catalysts [BR:
dtr03110
]
Heat shock proteins
HSP60 / Chaperonin
RSDT_1067 (groL)
Mitochondrial biogenesis [BR:
dtr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
RSDT_1067 (groL)
Exosome [BR:
dtr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RSDT_1067 (groL)
Exosomal proteins of other body fluids (saliva and urine)
RSDT_1067 (groL)
Exosomal proteins of breast cancer cells
RSDT_1067 (groL)
Exosomal proteins of colorectal cancer cells
RSDT_1067 (groL)
Exosomal proteins of bladder cancer cells
RSDT_1067 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
divDNAB
KH_PARP14_2
Motif
Other DBs
NCBI-ProteinID:
BAV92579
UniProt:
A0A1J1E3V6
LinkDB
All DBs
Position
1391318..1392958
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AA seq
546 aa
AA seq
DB search
MSAKEILFDVKAREKLARGVDKLSNAVKVTLGPKGRNVVLEKSFGSPIITKDGVTVAKEI
ELDDKFENMGAQLVKEVASKTSDAAGDGTTTATILAQTIYHEGTKLVAAGRNPMSIKRGI
DKAVGELIKELANLSKPTRDQKEIAQIGTISANTDAAIGNIIAEAMDKVGKEGVITVEEA
KGLETTMDVVEGMRFDRGYLSPYFVTNAEKMICELDNPYILCTEKKVSSMKDMLPVLEQV
AKVSRPLMIIAEDVEGEALATLVVNKLRGALQVVAVKAPGFGDRRKAMLQDIATLTGGQV
ASDDTGSKLENLALSDLGTAKRIVIDKENTTIVDGAGKSEDIKARVKQIRSQIEESTSDY
DREKLQERLAKLVGGVAVVHVGAATEVEMKEKKDRVEDALNATRAAVEEGIVPGGGTAFI
RVARVLNDIKPADDDEMAGVNIIRRAIEEPLRQIAHNAGFEGSIVVEKVRQGKGGFGFNA
ASGEYEDLIKAGVIDPKKVTRTALQNAASVASLLLTTECAVAEKPEPKKDAAPSMPGGMG
GMDGMY
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaaagaaattctttttgatgttaaagcccgtgaaaaactcgcccgcggcgtg
gataagctttccaacgccgtaaaggtgacgcttggccccaagggacgaaatgtcgtgctt
gaaaaatctttcggctcgccgatcatcaccaaggacggcgtgactgtggctaaagagatt
gagttggacgacaaatttgaaaacatgggcgcgcagttggtcaaggaagtggcttccaaa
acctccgacgccgctggcgacggcaccactaccgccaccatacttgcccagacaatttac
cacgaaggtaccaagctggtggcggccgggcgcaaccccatgtccatcaagcgcggcatt
gacaaggctgtgggtgagctgatcaaggaactcgccaatctgtccaagcccacccgcgac
cagaaagaaattgcccagatcggcaccatttccgccaacacagacgccgccatcggcaac
atcattgccgaagccatggataaagtgggcaaggagggcgtgatcaccgttgaggaagcc
aaaggccttgaaaccaccatggatgtggtggaaggcatgcgttttgaccgcggctatctc
tcgccctattttgtcaccaatgcggaaaaaatgatctgtgagctggacaatccctacatt
ctctgtaccgagaagaaagtttccagcatgaaggacatgttgcctgtacttgaacaggtg
gccaaagtcagccgtccgctgatgatcattgccgaagatgtggaaggcgaagcgctggcc
accttggtggtcaacaaactgcgcggagcgctgcaggttgtggctgtgaaggcccccggc
ttcggcgaccgccgcaaggccatgctgcaggatatcgccacactgaccggcggacaagtg
gcgtctgacgacacaggctccaagcttgaaaacctggccctgagcgacctcggcacagcg
aagcgcatcgtgattgacaaggaaaacaccaccattgtggatggcgcgggcaagagcgag
gacatcaaggctcgtgtgaagcagattcgctcgcagattgaagaaagcacatccgactat
gaccgcgagaaattacaggaacgtttggccaaactcgtgggcggcgtggcggtagtgcat
gtgggcgccgccactgaagtggaaatgaaagaaaagaaagatcgcgtggaagacgcactg
aacgctacccgtgccgctgttgaagaaggcattgtgcccggcggcggcacggcgtttatc
cgcgttgccagggtgttgaacgatattaagcctgccgacgacgacgaaatggctggcgtg
aacatcattcgccgcgccattgaggagccgttgcgccagattgcccacaacgccggattt
gaaggctctattgtggtggaaaaagtgcgccagggcaagggcggcttcggttttaatgcc
gcttccggcgagtatgaagacctcatcaaggccggtgtcattgaccccaaaaaggtcacg
cgtactgccctgcagaacgccgcttcagtagcctccctgctcctgacgacggaatgcgcc
gtggctgaaaagccggaaccaaagaaagatgctgctccgtccatgcccggcggcatgggt
ggcatggacggcatgtactag
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