Candidatus Desulfovibrio trichonymphae: RSDT_1069
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Entry
RSDT_1069 CDS
T05578
Symbol
uvrD
Name
(GenBank) DNA helicase II UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03420
Nucleotide excision repair
dtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSDT_1069 (uvrD)
03430 Mismatch repair
RSDT_1069 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_1069 (uvrD)
Enzymes [BR:
dtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSDT_1069 (uvrD)
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSDT_1069 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RSDT_1069 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BAV92581
UniProt:
A0A1J1DV20
LinkDB
All DBs
Position
complement(1394153..1396303)
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AA seq
716 aa
AA seq
DB search
MIDYTATLNEAQYEAVTSGDGPVLVVAGAGSGKTRTIIYRLAWLVEHGTPPESILLLTFT
RKAAHEMLHRAGLLLGAGLSRTQGGTFHAFAYGALRANHPLWLNGRPFTLMDASDITDAI
RHCKEALKLGRGDRSFPKTQTIAGFFSKARNKELPLADVLEREAFHLLPHSEALVSLEVA
YTAWRREKGLFDYDDLLFELEGLLADETAARILRRRFTHILVDEYQDTNRVQARITRLLA
GVRAAGEVGADPCNVMAVGDEAQSIYAFRGADVRNILDFQKIFPGTRVIRLEENYRSTKP
VLEVANSLLANAAESFHKTLFTRTEGGDPVRLVMPLSDMSEATLVVRRIRELLDIYLPHE
IAVLFRAGFHSYHLEMALQQAGIAFRKYGGLRYTEAAHVKDIVAYARLVLNLLDMPAFAR
VAALHSGIGPKTVQKVYAALSLCDPAITSKALARYPGLQEDIGFVDKLRALQQKPEDIFS
AVLEHYFPKLEFLYPDDWPRRRQGLEEIIQMAAGYAELDIFVADLALESPEADGSDNENR
ITLSTVHSAKGLEWNAVLIIDLVEDRFPSRHALARPDDFEEERRLMYVACTRARKNLDLY
APASIYSRATRGNLYVSQSPFVRELPLGLAEEWVESLGGTLTRRKISHPARSPHPSCDSL
RNTEGEPARSPACGACRHRIFGRGKIVKHLPPDKVQVNFPGFGLKIILAEYLLMED
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgattgactacaccgctaccctgaacgaagcacagtatgaagccgtcaccagcggcgac
ggccctgtgcttgtggtggccggcgcgggcagcgggaagacacgcaccatcatctatcgt
ctggcctggcttgtggagcacggcacgccgcccgagtccattctgttgttgaccttcacg
cgcaaggccgctcatgagatgcttcacagagcgggattgttgcttggcgcgggtctgtcc
agaacgcaaggaggcacttttcacgcgttcgcgtacggagcgttgcgcgctaaccatccg
ctctggctgaatggccgccccttcactctcatggacgcgtcagatattaccgacgcgata
cgacactgcaaagaggcactcaagctgggacgtggggatcgttccttcccgaaaacacaa
accatagctggctttttcagcaaggcccgcaacaaagaattgccgcttgcggatgtgctt
gagagggaggcttttcatctgctgccgcactctgaagccctggtgtcgctcgaagtcgcc
tatacggcatggcgtcgtgaaaagggcctgttcgattatgatgatctgctgttcgagttg
gaggggctgctggctgacgagacggccgcgcgaatcttgcgtcggcgttttacccatatt
ctggtggacgaataccaggataccaacagagtgcaggcccgcatcacgcgtcttctggcc
ggtgtcagggctgcaggggaagtaggggctgatccgtgcaatgtgatggccgtgggcgac
gaggcccagtccatctatgcttttcgtggcgcagatgtacggaatatacttgattttcaa
aaaatatttcctggaacgcgcgttattcgccttgaagaaaactatcgttccacaaagccg
gtgctggaggtggctaacagtttgctggcgaacgcggcggagtctttccacaagacgctc
tttacccgtacggaaggcggcgaccctgtgcgtcttgtcatgcctttgagcgacatgagt
gaagccactctggtggttcgccgcatacgtgaattgcttgacatatatctgccgcatgaa
attgccgtgctgttccgtgcgggctttcattcctaccatctggaaatggccctgcaacag
gcagggatagcctttcgcaaatacggaggcctgcgttacactgaggccgctcatgtcaaa
gacattgtcgcttacgcgcgtcttgtactcaacctgctggacatgccggccttcgcgcgt
gtggcggctttgcacagcggcatcggaccaaagacggtgcagaaagtttatgccgcattg
tcactctgcgacccggcgatcacgtccaaagctctagcccgttatcccggtttgcaggag
gatattggttttgtagacaaactgcgcgctctgcaacaaaagccggaggacattttcagc
gccgtattggagcactattttcccaagctggaattcctctaccctgatgactggccgcgc
cgcaggcaaggtctagaagaaattatccagatggccgcaggctatgcggagctggatatc
ttcgtagccgacctcgcgctggaatcgcccgaagcggatggaagcgacaacgaaaatcgc
attaccctgtctaccgtacattcggccaaggggctggaatggaacgccgtactgatcatt
gatcttgttgaagaccgatttccctcacggcacgctctggcaagaccggatgattttgag
gaagaacgccggcttatgtatgttgcctgtacccgtgcccgcaaaaatcttgacttgtac
gcccccgcctccatttacagccgggccacacgcggcaacctgtacgtgagtcaaagccct
tttgttcgcgaactacccttgggccttgcagaggaatgggtggagagtctgggcggcacg
ctgacgcgacgtaaaatttcacatccggcccgttctcctcatccctcttgcgattccctg
cggaacacggaaggagaaccagcgcgatcgccggcatgcggtgcttgccgtcaccgtatt
ttcggcaggggaaaaatagtgaaacatctgccgccggacaaagtgcaggtcaatttcccc
ggtttcggtctgaagattattctggcggaatatttactgatggaagactga
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